Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 485 a.a., multidrug efflux RND transporter outer membrane channel subunit OprM from Pseudomonas aeruginosa PA14

 Score =  652 bits (1681), Expect = 0.0
 Identities = 335/483 (69%), Positives = 401/483 (83%), Gaps = 2/483 (0%)

Query: 1   MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAK-MAAAEQGWRHF 59
           M +S +SLAV A +L GCSLIPDY++P+APVAA YPQG AY    GA  + AA+ GWR F
Sbjct: 1   MKRSFLSLAVAAVVLSGCSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREF 60

Query: 60  FNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQ 119
           F DP LQQLI  AL NNRDLRVAALN++A+RAQYRIQR+DLFP +   GSG+RQR+PGD 
Sbjct: 61  FRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRADLFPRIGVDGSGTRQRLPGDL 120

Query: 120 SQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVAN 179
           S TG P I+S Y  TLG +++ELDLFGR+RSL +QALE Y A+E+A+RS Q +LVASVA 
Sbjct: 121 STTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVASVAT 180

Query: 180 AYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQY 239
           AY+T +AD+  L+LT+DTL TY++SF LT R+ +VGV+SALDL Q++TAVE ARA LAQY
Sbjct: 181 AYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQY 240

Query: 240 QRLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLK 299
            RLVAQDQN+LVLLLG+ +P NLP    LD  +LTE+PAGLPSDLLQRRPDILEAEH L 
Sbjct: 241 TRLVAQDQNALVLLLGSGIPANLPQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLM 300

Query: 300 AANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRAS 359
           AANA+IGAARAAFFPSISLTA+AGT S +LSGLF  GSG+WLFQPSIN+PIF AG+LRAS
Sbjct: 301 AANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRAS 360

Query: 360 LDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLAERR 419
           LDY+KIQK+I+VA YEKAIQTAFQEV+DGLA+R T+ EQLQAQRD V A+ +YY+LA++R
Sbjct: 361 LDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLADKR 420

Query: 420 YRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERT-GQTETISK 478
           YR G+D+ LT LDAQRSLF+AQQ LITDRL+QLTSEVNLYKALGGGW ++T  Q +T  K
Sbjct: 421 YRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQQTVTQQQTAKK 480

Query: 479 EKP 481
           E P
Sbjct: 481 EDP 483