Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 491 a.a., RND transporter from Herbaspirillum seropedicae SmR1

 Score =  372 bits (954), Expect = e-107
 Identities = 219/470 (46%), Positives = 297/470 (63%), Gaps = 9/470 (1%)

Query: 1   MSKSLISLAVTAFILGGC-SLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQG--WR 57
           ++++ + LAV    L  C SL P Y++P APVAA YP GP           AA     WR
Sbjct: 8   LTRTRLLLAVLPLCLTACQSLAPHYQRPAAPVAAVYPDGPVNEAAHQVANEAASPPLPWR 67

Query: 58  HFFNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPG 117
            +F DP LQ LI  AL N+RDLR AAL +   +A Y I  +DLFP + A     R R P 
Sbjct: 68  DYFTDPPLQALITQALENSRDLRTAALRVQEAQALYGIGHADLFPTIGAQAGLDRSRTPA 127

Query: 118 DQSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASV 177
           D + T +P + S+Y A LG+SS+E+DL+GR+RSL + ALE+  AS+  R +  +SL+A V
Sbjct: 128 DLNLTRRPLVGSAYQAGLGLSSWEIDLWGRLRSLDDAALESARASQATRSAVALSLMAQV 187

Query: 178 ANAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLA 237
           A+A++      E L++   T+ + +ESFR+ SR  EVG +S L+L+Q  T +  A+A  A
Sbjct: 188 ADAWLELAELDERLEIANQTIASRQESFRIFSRRVEVGATSRLNLTQIETLLTQAQALGA 247

Query: 238 QYQRLVAQDQNSLVLLLGTSLPDNLPASHL---LDSDMLTEMPAGLPSDLLQRRPDILEA 294
           Q Q+  AQ  N+L LL+G+  P  LP       LD+ +   +  GLP+ LL RRPD+  A
Sbjct: 248 QLQQQRAQRLNALTLLVGS--PVVLPVGQARAGLDA-VFAPLQPGLPALLLTRRPDVAAA 304

Query: 295 EHSLKAANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAG 354
           EH L AANANIGAARAAFFPSISLT + GT+S+ELSGLF+ GS AW F PSI +PIF AG
Sbjct: 305 EHRLMAANANIGAARAAFFPSISLTGNVGTASAELSGLFRDGSHAWTFSPSITLPIFTAG 364

Query: 355 NLRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYR 414
            LR +L  S+++++++VA YEK +QTAF+EV+D LA+R+   +QL+  +  V   ++  R
Sbjct: 365 RLRNNLALSEVRRDLAVAAYEKTVQTAFREVADALAARQWLTQQLEIAQSAVRVQRERAR 424

Query: 415 LAERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGG 464
           L+  RY  G    L  LDAQR L SAQQ L+  R + L+S V LY ALGG
Sbjct: 425 LSALRYDNGAAPFLDVLDAQRDLLSAQQQLVQIRRALLSSSVALYAALGG 474