Pairwise Alignments

Query, 486 a.a., RND efflux system, outer membrane lipoprotein, NodT from Pseudomonas syringae pv. syringae B728a

Subject, 471 a.a., efflux transporter outer membrane subunit from Dyella japonica UNC79MFTsu3.2

 Score =  416 bits (1069), Expect = e-121
 Identities = 239/474 (50%), Positives = 310/474 (65%), Gaps = 8/474 (1%)

Query: 1   MSKSLISLAVTAFILGGC-SLIPDYK--QPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWR 57
           M+KS + +   A  LGGC SL P     QP  P A   P+    +     +  AA+ GWR
Sbjct: 1   MNKSFLLICAAALALGGCVSLAPKLPAAQPDVPAAWPLPEHADAAATGATQGRAADIGWR 60

Query: 58  HFFNDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPG 117
            F+ DP L  LI+ +L NNRDLRVA LN++  RAQYRIQR+D  P+++AT S   QR  G
Sbjct: 61  QFYVDPRLATLIEQSLRNNRDLRVAVLNVEKARAQYRIQRADRLPSIAATAS--LQRAGG 118

Query: 118 DQSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASV 177
                GQ G    Y A LG +++ELDLFGRV SLS  ALE Y A  EA RS Q+SL+A V
Sbjct: 119 SGQPPGQVG--QQYRAELGTTAFELDLFGRVNSLSTGALERYLAQGEASRSAQLSLIAEV 176

Query: 178 ANAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLA 237
           ANA++T  AD+E LK+ Q T +T E SF+LT +   +G +S+LD+SQ++T VESARA +A
Sbjct: 177 ANAWLTLAADRESLKVAQATRETQEASFKLTEQRHALGAASSLDVSQAQTTVESARADMA 236

Query: 238 QYQRLVAQDQNSLVLLLGTSLPDNLPASHLLD-SDMLTEMPAGLPSDLLQRRPDILEAEH 296
           +Y   VAQD N+L LL G +L + L  S L D + ML  +PA LPS++L RRPDIL++EH
Sbjct: 237 RYTGQVAQDVNALRLLAGGALDEALLPSGLGDDASMLGALPAELPSEVLLRRPDILQSEH 296

Query: 297 SLKAANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNL 356
            L+AANA+IGAARAAFFPSI LT S G++S +L+ LF  G+  W F P I++PIF  G L
Sbjct: 297 LLRAANADIGAARAAFFPSILLTGSVGSASGQLNNLFDSGTRVWSFAPQISLPIFQGGRL 356

Query: 357 RASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLA 416
           RA L  +K  ++I++A YE+AIQ  F+EV+D LA   T   Q QAQ   V A      L+
Sbjct: 357 RAQLAGAKADQQIALAQYEQAIQAGFREVADALALTGTLAGQRQAQEALVGAAARADELS 416

Query: 417 ERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERT 470
             RY+ G DS L  LDAQR+L++AQQ LI  RL++ T+ V LYK LGGGW ER+
Sbjct: 417 RARYKAGKDSYLVALDAQRALYAAQQQLIATRLAEQTNRVTLYKVLGGGWNERS 470