Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 671 a.a., flagellar hook-associated protein FlgK from Pseudomonas stutzeri RCH2

 Score =  454 bits (1169), Expect = e-132
 Identities = 285/698 (40%), Positives = 394/698 (56%), Gaps = 47/698 (6%)

Query: 3   LISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVL-TTASAQIALGQGVGYIGTGTTL 61
           L+SIGLSG+ AS   ++  G+N  NV+T GYSRQ     T S Q +   G GYIG+GTTL
Sbjct: 4   LLSIGLSGLAASKTQLSITGHNITNVNTPGYSRQDATQATRSPQFS---GAGYIGSGTTL 60

Query: 62  SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGI 121
            +VRR Y+ +L +QL+SST+LSAD  AY  Q ++ D+LL+ + TGI+  L  FF+ +Q  
Sbjct: 61  VEVRRSYSEFLTSQLRSSTSLSADVEAYKSQINQLDSLLAGTTTGITPSLQKFFSALQTA 120

Query: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181
           A        R   L +A  L+ RFN+V  +LS QN+  N Q+   T +VN L  ++ SLN
Sbjct: 121 AEDPANIPARQLVLAEAEGLARRFNTVYDRLSEQNNFTNKQMSAVTDQVNRLAGSIGSLN 180

Query: 182 KQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVV-ENNGNFDIYTGTGQSLVSGGTSY 240
           + I  A+A    PN LLD+R EAVRQL+  +GV VV +++ +F+I+ G+GQ LV G T  
Sbjct: 181 EAIAIAAANGKQPNDLLDARDEAVRQLSGYIGVTVVPQDDSSFNIFIGSGQPLVVGSTVA 240

Query: 241 KMSASPSPSDPLQYNVQIAYGQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGRTAMV 300
           ++   P   DP ++ VQ   G ++  +TS +TGG +GGL+RYR EVL    N LGR A+ 
Sbjct: 241 RLEVVPGQGDPNRHEVQFISGGSRQGITSQITGGELGGLIRYREEVLDSTMNSLGRLALA 300

Query: 301 LSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGDTSKL 360
           +SDQVN+Q+ QG+D KG  GS L+   N       R      NS     LN+T  +TS+L
Sbjct: 301 VSDQVNTQLGQGLDLKGQVGSALFGDYNDPALAKLRVNAFAGNSSAQPVLNIT--NTSQL 358

Query: 361 TANDYEVTFSDSSNFSVRRLPNGE-------SVGSGSLADNPPKQFEGFSVSLNGNTLAA 413
           + +DY + + D S+F +RRL + +         G+ S+ D   +  +GF + L     A 
Sbjct: 359 STSDYLMEY-DGSSFKIRRLSDNQLMTATENPAGTLSITDKNGRD-QGFQIVLGNPPPAP 416

Query: 414 GDSFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPVVNTKSDIYDS 473
           GD F + PTR GAS I   L  A  +A AAP+ A +   NSGTG   QP           
Sbjct: 417 GDKFSLQPTRRGASDIKATLDQADQLAFAAPVRAQSTLQNSGTGVIGQP----------- 465

Query: 474 TQTADLRNALKDSTPMKLVMGAVNSSGVQSYTVIKANGGAVLDQNGNA----IGGSIIQG 529
                  N L   +P   +  A  S+  +  T+     G  L     A       SI  G
Sbjct: 466 -------NLLSAPSP---INAAALSAAFEGLTLSYDGNGLTLPAPAPAGLTLSPSSITAG 515

Query: 530 QANTVKLNVGYTDTTTTPNSKTAFELQMTISGSPVANDTFSIGLTGGGSSDNRNALAVVG 589
           Q NT+ L    T TT T  +   +  + T+SG P   DTFS      G SDNRNAL +V 
Sbjct: 516 QTNTLNL----TLTTGTAPNVQQYSFEFTVSGRPETGDTFSFNFNQSGVSDNRNALKLVD 571

Query: 590 LQTAKTVGVING--GVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVS 647
           LQT +TVGV  G  G G S +  Y   V  VGTL +Q++ D  AT A++ QA  +RDS+S
Sbjct: 572 LQTKQTVGVTPGVAGSGFSFTDGYGELVERVGTLTAQARMDSEATGAILKQATDNRDSLS 631

Query: 648 GVSLDEEASNLIKYQQYYTASSQIIKAAQTIFSTLINS 685
            V+LDEEA+NLIK++QYY AS+QII+ A+++F TLI+S
Sbjct: 632 AVNLDEEAANLIKFEQYYNASAQIIQVARSLFDTLISS 669