Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 550 a.a., flagellar hook-associated protein FlgK from Rahnella sp. WP5

 Score =  255 bits (651), Expect = 4e-72
 Identities = 177/491 (36%), Positives = 265/491 (53%), Gaps = 43/491 (8%)

Query: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61
           SLI+  +SG+NA+ AA++T GNN ANV  AGY+RQ  + T S  I+     GYIG G T+
Sbjct: 4   SLINTAMSGLNAAQAALSTTGNNIANVSVAGYNRQTAIITQSNGISTP--AGYIGNGVTV 61

Query: 62  SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGI 121
           + V R YNS++  QL  ++A  +       QAS  D LL DS+TGI   ++ FF  +Q +
Sbjct: 62  TGVNREYNSFVVKQLLGASATGSALSTQLDQASSIDDLLGDSSTGIDATMSTFFKGLQTL 121

Query: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181
            ++A+ SA R + L +A  L+A+FNS +  L+  N  VN Q+     ++N   + +A LN
Sbjct: 122 TSNASDSAARQAVLGEAQGLTAQFNSSAKYLNDMNTAVNQQVTQNVDQINTYASQIAKLN 181

Query: 182 KQI--TQASAGNATPNTLLDSRSEAVRQLNELVGVKVVENNGN-FDIYTGTGQSLVSGGT 238
            QI  T+ S G   PN LLD R + V QLN + GV V + +G+ ++I    G  LVSGG 
Sbjct: 182 SQITATRGSTGQ-EPNALLDQRDQLVSQLNNVTGVVVTQQDGDTYNISFANGTPLVSGGN 240

Query: 239 SYKMSASPSPSDPLQYNVQIAYGQTQTDVT------SVLTGGSIGGLLRYRNEVLVPATN 292
           +  + A PS +DP +  V    G TQ D +      S LT GS+GG L +R + L PA N
Sbjct: 241 AKTVVAMPSSADPSKLTV----GMTQPDGSVSEIQESRLTTGSLGGTLTFRKDNLEPAIN 296

Query: 293 ELGRTAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNV 352
           +LG+ A+ LSD  N+    G D  G+ G++ +S        T  +    T + GS  L+V
Sbjct: 297 QLGQLALALSDSFNTTNKAGFDLNGDAGTDFFS-------FTGATTVSNTKNTGSAQLSV 349

Query: 353 TIGDTSKLTANDYEVTFSDSSNFSVRRLPNGESV----GSGSLADNPPKQFEGFSVSLNG 408
              DT+ + A+DY + ++ +S + V R+ +G  +    G+ S  D P   F+G SVS+ G
Sbjct: 350 AYTDTAAVKASDYTMAYNGTS-WDVTRVSDGAKITPTAGTDSNGD-PTMNFDGLSVSVTG 407

Query: 409 NTLAAGDSFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPVVNTKS 468
            T    DS  +      A  +++A++D+  IAA       AG+++SG         NT +
Sbjct: 408 -TPNTNDSITIKTVSNVAGSMNLAISDSSLIAA-------AGAADSGVSD------NTNA 453

Query: 469 DIYDSTQTADL 479
               + QTA L
Sbjct: 454 QKLLNLQTAKL 464



 Score =  106 bits (265), Expect = 3e-27
 Identities = 123/435 (28%), Positives = 196/435 (45%), Gaps = 69/435 (15%)

Query: 291 TNELGRTAMVLSDQ---VNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSV-- 345
           T +   +A  L+D    VN Q+ Q +D    + S + + +NS    T+ S G+  N++  
Sbjct: 142 TAQFNSSAKYLNDMNTAVNQQVTQNVDQINTYASQI-AKLNSQITATRGSTGQEPNALLD 200

Query: 346 -----GSGNLNVTIGDTSKLTANDYEVTFSDS----------------SNFSVRRLPNGE 384
                 S   NVT    ++   + Y ++F++                 S+    +L  G 
Sbjct: 201 QRDQLVSQLNNVTGVVVTQQDGDTYNISFANGTPLVSGGNAKTVVAMPSSADPSKLTVGM 260

Query: 385 SVGSGSLADNPPKQFEGFSVSLNGNTLAAGDSFKVIPTRTGASGISVALTDAKDIA--AA 442
           +   GS+++    +    + SL G      D+ +    + G   +++AL+D+ +    A 
Sbjct: 261 TQPDGSVSEIQESRLT--TGSLGGTLTFRKDNLEPAINQLGQ--LALALSDSFNTTNKAG 316

Query: 443 APLTATAGSSNSGTGGFTQPVVNTKSDIYDSTQTADLRNALKDSTPMKLVMGAVNSSGVQ 502
             L   AG+      G T  V NTK+     T +A L  A  D+  +K     +  +G  
Sbjct: 317 FDLNGDAGTDFFSFTGATT-VSNTKN-----TGSAQLSVAYTDTAAVKASDYTMAYNGT- 369

Query: 503 SYTVIKANGGAVL------DQNGNAIGGSIIQGQANTVKLNVGYTDTTTTPNSKT----- 551
           S+ V + + GA +      D NG+           N   L+V  T T  T +S T     
Sbjct: 370 SWDVTRVSDGAKITPTAGTDSNGDPT--------MNFDGLSVSVTGTPNTNDSITIKTVS 421

Query: 552 --AFELQMTISGSPVANDTFSIGLTGGGSSDNRNALAVVGLQTAKTVGVINGGVGTSLSG 609
             A  + + IS S +     + G    G SDN NA  ++ LQTAK V     G  T LSG
Sbjct: 422 NVAGSMNLAISDSSLIA---AAGAADSGVSDNTNAQKLLNLQTAKLVE----GKST-LSG 473

Query: 610 SYASTVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASS 669
           +YAS VS VG   S      T+ A +V+Q  + + S+SGV+LDEE  +L +YQQYY A++
Sbjct: 474 AYASMVSNVGNQVSTLTTTSTSQANIVTQLTAQQQSISGVNLDEEYGDLQRYQQYYLANA 533

Query: 670 QIIKAAQTIFSTLIN 684
           Q+++ A TIF  +IN
Sbjct: 534 QVVQTASTIFDAIIN 548