Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 386 a.a., hypothetical flagellar hook-associated protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (486), Expect = 4e-53
 Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 9/380 (2%)

Query: 1   MSLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTT 60
           + L++I  +G+ AS + +    NN AN +T GY RQ    T      LG    + GTGT 
Sbjct: 3   IDLLNIARTGVLASQSQLGVTSNNIANANTVGYHRQVATQTTLDSQRLGSS--FYGTGTY 60

Query: 61  LSDVRRIYNSYLDTQLQ-SSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQ 119
           +SDV+RIYN Y   +L+   T LSA   +Y G+ S+ D + S     +   L D F  + 
Sbjct: 61  VSDVKRIYNDYAARELRIGQTTLSAAEASY-GKLSELDQIFSQIGKVVPQSLTDLFAGLN 119

Query: 120 GIATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLAS 179
            +A        RSS L  A  L+   N + S L+ Q +  N Q+   TK++NE++T LA+
Sbjct: 120 SLADLPADLGIRSSTLNDAKQLANSLNQMQSTLNGQLNQTNDQITGMTKRINEISTELAN 179

Query: 180 LNKQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVE-NNGNFDIYTGTGQSLVSGGT 238
           LN ++ ++   N  P  LLD +   V++L++   V V+   NG   I  G    LVSG  
Sbjct: 180 LNLELMKSP--NQDP-ILLDKQDALVQELSQYAQVNVIPLENGAKSIMLGGSIMLVSGEV 236

Query: 239 SYKMSASPSPSDPLQYNVQIAYGQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGRTA 298
           +  MS +     P +  +  + G           GG +G L  YR++ LVPA+ EL + A
Sbjct: 237 AMSMSTATGDPFPNELQLMSSIGSQSVKADPSKLGGQLGALFEYRDQTLVPASLELDQLA 296

Query: 299 MVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGDTS 358
           + ++D  N    QG D  G  G+N++  IN    ++   +G  T++ G+  L V I DTS
Sbjct: 297 LGVADSFNKLQAQGFDLNGQVGANMFKDIND-PLMSLGRVGGFTDNTGNATLGVNIDDTS 355

Query: 359 KLTANDYEVTFSDSSNFSVR 378
            LT   YE++F+  S + +R
Sbjct: 356 ALTGGSYELSFTAPSTYELR 375