Pairwise Alignments

Query, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

Subject, 778 a.a., flagellar hook protein FlgK from Herbaspirillum seropedicae SmR1

 Score =  311 bits (798), Expect = 6e-89
 Identities = 240/791 (30%), Positives = 389/791 (49%), Gaps = 127/791 (16%)

Query: 2   SLISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTL 61
           ++ SIG S + A+ AA  T  +N +N  T GY+RQ+V+ +++  I    G G++G GT +
Sbjct: 4   NIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGI--NYGYGFVGQGTQV 61

Query: 62  SDVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATGISVQLADFFTKMQGI 121
           ++++R+YN +L+ Q  +S   ++   +Y  + S+ + +++D+  G+S  L DFF+ +Q +
Sbjct: 62  NEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQNL 121

Query: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181
           A++    A R S L+QA  L AR +S++ QLS+ + +VN+Q+ +    +N     ++ LN
Sbjct: 122 ASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQLN 181

Query: 182 KQITQA--SAGNATPNTLLDSRSEAVRQLNELVGVKVV-ENNGNFDIYTGTGQSLVSGGT 238
           + I +A  + G   PN LLD R + + QLN+LV +  V ++ G+  ++ GTGQSLV+G  
Sbjct: 182 QAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGDN 241

Query: 239 SYKMSASPSPSD--PLQYNVQIAYGQTQTDVTSVL-TGGSIGGLLRYRNEVLVPATNELG 295
             +M  + SP+D   LQ    I  G T T   S    GGS+GGLL+YR+E L P  N LG
Sbjct: 242 VTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNALG 301

Query: 296 RTAMVLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIG 355
           R A+ +    N Q   G+D  GN G+ L++       ++  ++     + G+ NL  TI 
Sbjct: 302 RIAIAMGTAFNQQQKLGLDQNGNQGTALFN-------VSSPNLIGYPGNTGTTNLTTTIT 354

Query: 356 DTSKLTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNG------- 408
           D S LT +DY +++ D +N++  RL +         A   P   +G + S NG       
Sbjct: 355 DPSALTTSDYTLSY-DGTNYTFTRLSDNTKTIKAPGAF--PVTLDGVTYS-NGAAAPGPF 410

Query: 409 -NTLAAGDSFKVIPTRTGASGISVALTDAKDIAAAAPLTATAGSSN--------SGTGGF 459
             T+AAG+++K+ PT  GA+G S+AL + + +A AAP+  +  ++N        S TG  
Sbjct: 411 APTMAAGNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNA 470

Query: 460 TQPVVNTKSDIYDSTQTADLRNALKDSTPMKLVMGA--VNSSGVQSYTVIKANG------ 511
                +  S  Y    +     AL  STP K+ + A    ++ V   TV  A+G      
Sbjct: 471 IISNTSLDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVT 530

Query: 512 ---------GAVLDQNG--NAIGGSIIQG----------QANTVKLNVGYTD----TTTT 546
                    G  +   G   A+ GS   G             T  ++ G       TTTT
Sbjct: 531 GATPFDYKSGMTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTT 590

Query: 547 PNSK------------TAFELQ-----------------MTISG-----SPVANDTFSI- 571
           P +K              F +                   TI+G     S  A D++ I 
Sbjct: 591 PLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEIS 650

Query: 572 -------GLTGGG-----------SSDNRNALAVVGLQTAKTVGVINGGVGTSLSGSYAS 613
                  G  G G           +SDNRNALA+  LQTA T+       GTS  GSY+ 
Sbjct: 651 GVQFAISGQPGNGDQFTIAANTNAASDNRNALAMGKLQTANTIN------GTSFQGSYSQ 704

Query: 614 TVSVVGTLASQSKNDVTATAAVVSQAKSSRDSVSGVSLDEEASNLIKYQQYYTASSQIIK 673
            V+ +G   ++     TA  A ++  ++ + S SGV+ DEE +++I+ QQ Y A+++II+
Sbjct: 705 LVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQ 764

Query: 674 AAQTIFSTLIN 684
           AA  + + L++
Sbjct: 765 AASDMINVLLS 775