Pairwise Alignments

Query, 340 a.a., transport system permease protein from Pseudomonas syringae pv. syringae B728a

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  193 bits (491), Expect = 5e-54
 Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 39/363 (10%)

Query: 7   LSHVLWVSAVLV----LAIMIGAAIGETSISLQVVFQVLANK-----LWAASYVLDPIDE 57
           L+   W+   LV    L  +  A+ G  +IS   VF V  +K     +   +     + +
Sbjct: 18  LTRQQWLMLALVGFTLLTPIAAASFGAANISFLDVFNVFIDKFSQLFMGENAPSTAAMTD 77

Query: 58  GIVWNYRLTRAIVAAACGAGLAICGVVLQSLLRNPLADPYLLGISAGASTGAVLVAILGF 117
            IV   RL R ++A   GAGL++ G VLQ++ RNPLADPYL GIS+GAS GAV++  L  
Sbjct: 78  RIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLTLFS 137

Query: 118 GAGAI------------------------SMSAGAFVGAVAAFSLVALLAHSSRGTTA-A 152
           G+G                          S+  GAF+GA  + S++ +LA S  G  +  
Sbjct: 138 GSGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGA--SLSVLIVLALSGLGLNSQV 195

Query: 153 GQIILAGIAGSQLFNALTSFLITKSASSEQARGIMFWLLGNLSGVRWHSVWLAVPTVLVG 212
            +++L+G+A S +F ALTS L+   AS +    ++FW LG+ +   W  + L    VLV 
Sbjct: 196 ERMLLSGVATSFMFGALTSLLLY-FASPQATASVLFWSLGSFAKASWSLLILPTIVVLVS 254

Query: 213 LLVCLWHRRALDAFTFGSDSAASLGIAVRRVQIILITTAALVTAVMVSIVGSIGFVGLVI 272
             + L  +R + A   G ++A +LG+ V ++++ ++   +L+TA++V+  G IGFVGL+I
Sbjct: 255 FFIILGWKRQIMALQAGDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVGLMI 314

Query: 273 PHAVRMLVGVRHARLVPLSALSGALFLIAADILSRTLIKGQALPIGVITALIGAPVFALI 332
           PH VR+L   R   L  L+AL G LF++  D+L+R L+  Q LP+G+ITA IG+  F LI
Sbjct: 315 PHTVRLLFPGRQPIL--LTALVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFFLLI 372

Query: 333 LTR 335
           L R
Sbjct: 373 LRR 375