Pairwise Alignments

Query, 540 a.a., Rhs element Vgr protein from Pseudomonas syringae pv. syringae B728a

Subject, 1017 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 120/549 (21%), Positives = 212/549 (38%), Gaps = 68/549 (12%)

Query: 6   QVPFMLAITDCQPDLHIIN-FAGHEALNET---------YRFDLWMIGSHPQLDVRSLLH 55
           ++ F L +   + +  ++  F G E+L+++         +R+ + +  +   L     + 
Sbjct: 3   RLQFQLKVDGLEDESLVVRGFEGQESLSDSVWRCEPCYGFRYQVDLASALSNLTAEQFVD 62

Query: 56  REAFLSF---GESGGGRHGRIEHAARLHRGNRVSLYHLILVPDLQRLAQHRQRRAYQDRA 112
           + A L+    G+     +G +   ++   G+R + Y L LVP L+RL+     R +Q ++
Sbjct: 63  QTAHLTILRDGQVVQQINGIVRQLSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQS 122

Query: 113 IPQLIVRLLEAHGIGTNAYRFEHVNGLYPARPLHIQYDESDLHLLQRLCEEEGMHFRFEH 172
           +P++I  LL+  GI   A+  +        R   +QY E+DL  L R+  EEG+ +   H
Sbjct: 123 VPEIISILLQEMGIEDYAFALKRECA---QREFCVQYRETDLQFLHRIAAEEGLVYSHLH 179

Query: 173 RRSGHRLVFSDDPASFP--AQPLPVRFKRPQASDVPRETLLHLAERLGFPQFSRQPADHP 230
               H L+F+D   S P  A+P+P         ++P    L             +     
Sbjct: 180 EAQKHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFK 239

Query: 231 QPAHAPSSPHDAHPLTIAANH--AFQPPGLRGAISPREALSRQRGSRGLERLRCERSDVR 288
           +PA+  +       +     +   F  PG     +  +A S+ R    LE LR +     
Sbjct: 240 KPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIR----LEYLRRDALLAD 295

Query: 289 GQSIDTALQCGEVIQVLDHPEPLLNDQWLLTEVVHAGRQLQVLKGAAAHDALAILRILVE 348
            +S +  L  G    + DH +  +N  WL+ +  H G Q Q L+      A         
Sbjct: 296 AKSDEPLLLAGVRFDLQDHLDHAMNRDWLVVQANHQGTQPQALQEEGGSGATT------- 348

Query: 349 AQRSSPEAEQLQGNGYCNNFRVIPWATPFRPSISHPRPIVTGEHFATL---QRNDNQPDP 405
                          Y N  ++IP    +R +    +P V G   AT+   Q  +   D 
Sbjct: 349 ---------------YSNQLKLIPAHITWR-ARPCAKPQVDGPMIATVVGPQGEEIYCDN 392

Query: 406 PGYRSIRFDWHAQGPEDEP-------AQRWPVARVACPEIHRLPAGTRVRVRYLDNHPER 458
            G   + F W      +E        AQ W  ++     I R+  G  V V +L+  P++
Sbjct: 393 FGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRV--GHEVIVSFLNGDPDQ 450

Query: 459 PVICAAL--LANPGQDAVTAYPADCVRLANGQRLHINAHDGLTVRGRTAELRVDAQRILI 516
           P+I        N    A+  +    V       L    H G      + E +  +++IL+
Sbjct: 451 PIITGRTYHATNTAPYALPDHKTKTV-------LRTETHQGQGYNELSFEDQAGSEQILL 503

Query: 517 VAHADQQSL 525
            A  D  +L
Sbjct: 504 HAQKDWDAL 512