Pairwise Alignments

Query, 607 a.a., Excinuclease ABC subunit C from Pseudomonas syringae pv. syringae B728a

Subject, 609 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella loihica PV-4

 Score =  608 bits (1567), Expect = e-178
 Identities = 307/606 (50%), Positives = 424/606 (69%), Gaps = 7/606 (1%)

Query: 1   MTQTFDPGAFLATCSGRPGVYRMFDAEATLLYVGKAKNLKKRLASYFRKTGHAPKTGALV 60
           MT +F+   FL T S   GVYRM+DA+  ++YVGKAK+LKKRL+SYFR+     KT ALV
Sbjct: 1   MTDSFNATQFLKTVSSSAGVYRMYDAQGVVIYVGKAKDLKKRLSSYFRRNLPNVKTQALV 60

Query: 61  SRIAQIETTITGNETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDNAFPRLSIHRG 120
           S IA I+ T+T +ET+AL+LE   IK++ P YN+LLRDDKSYPY+FLS +  PRL+ HRG
Sbjct: 61  SHIANIDVTLTPSETDALILENDYIKQYMPRYNVLLRDDKSYPYIFLSGHRHPRLAYHRG 120

Query: 121 TKKAKGRYFGPYPSAGAIRESLSLLQKTFQVRQCEDSYFKNRTRPCLQYQIKRCKGPCVG 180
            ++ KG YFGPYP+ GA+RESL L+QK F +RQC+D Y+K R+RPCLQYQI RC  PCVG
Sbjct: 121 PQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKARSRPCLQYQIARCSAPCVG 180

Query: 181 LVEPEVYAEDVRHSVMFLEGRSNALSDELNASMEKAAMALDFERAAELRDQVALLRRVQD 240
            +  E YAE V+ + +FL G+   +   L   ME+AAM L++E AA  RDQ++ LRRV +
Sbjct: 181 KISDEDYAEQVKLASLFLRGKDQQVIATLVGKMEQAAMDLNYEDAARYRDQISALRRVAE 240

Query: 241 QQSMDGGTGDVDVVAAFVNPGGACVHLISVRGGRVLGSKNFFPQVGIEEEVGEVMSAFLA 300
           QQ +   +GD+DV+ A+   G AC HL+ +R G++ GS++++P V  E EV EV+ AF+ 
Sbjct: 241 QQEVSSDSGDMDVIGAYYASGIACFHLLFIRNGKIFGSRSYYPSVPDETEVSEVLRAFML 300

Query: 301 QYFLG-GIDRELPGEVIVNVINDDFPAFVDAVEELRGVEMVISHRVRGTRARWQQMAVTN 359
           Q++L     R LP E++V+   +D     +A+ +     ++I  +VR  RA + ++A  N
Sbjct: 301 QFYLNVDSQRTLPREIVVSHEFEDIHELEEAIAQASNRRLLIKTKVRSERASFLRIADAN 360

Query: 360 AEQALTARLANRQHVASRFEALAKVLGLEDPPMRLECYDISHSSGEATVASCVVFGPEGP 419
           A+ A+  RL+++  V  RF  L + L       R+EC+DISH+ GE+TVASCVVF  EGP
Sbjct: 361 AKNAVETRLSHQNTVEERFLLLEEALEQSQAINRMECFDISHTMGESTVASCVVFNREGP 420

Query: 420 IKSDYRRFNIEGVTAGDDYAAMHQALTRRYSRIKAGEGKLPDVLLVDGGKGQMSMARDVL 479
            K +YRR+NI G+T GDDYAAM QA+ RR+ +I+A +GK+PD+L +DGG GQ+ +A+ V+
Sbjct: 421 SKGEYRRYNISGITPGDDYAAMKQAIGRRFDKIEA-DGKIPDILFIDGGMGQLRIAQKVV 479

Query: 480 NE----LQVPELILLGVAKGTTRKAGFETLYLNDSAHEFTLPGDSPALHLIQQIRDEAHR 535
           NE    L V    L+GVAKG  RK G ETL   ++   F+LP DS ALHLIQ IRDE+HR
Sbjct: 480 NEKFAHLDVAP-TLIGVAKGEGRKPGLETLIYGENEVAFSLPADSGALHLIQHIRDESHR 538

Query: 536 FAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKK 595
           FAITGHR +R KTR TSTLE + GVGP RR+ LL++ GGLQ++  AS+ +++K PGIS +
Sbjct: 539 FAITGHRNKRQKTRNTSTLESIPGVGPKRRKALLQYLGGLQQVKGASVAQLSKVPGISLE 598

Query: 596 LAESIY 601
           +A++I+
Sbjct: 599 MAQTIH 604