Pairwise Alignments

Query, 587 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  242 bits (617), Expect = 3e-68
 Identities = 136/332 (40%), Positives = 197/332 (59%), Gaps = 37/332 (11%)

Query: 255 LVGASAAFNAATQALQRVAMTPATVLISGESGVGKEMFARQLHQLSRHREGPFVALNCAA 314
           ++G +AA       + +VA T A +L+ GE+G GKE+ AR LH+ S  RE  FVA+NC A
Sbjct: 144 IIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELVARSLHEQSSRREQNFVAINCGA 203

Query: 315 IPDNLIEAELFGVERGAYTGATHSRAGRFERANGGTLFLDEITSLSLAGQSKLLRALQER 374
           +P+NLIE+EL+G E+GA+TGA   R G+FE A GGTLFLDEI S+ +  Q +LLR LQER
Sbjct: 204 VPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLFLDEIESMPMQAQIRLLRVLQER 263

Query: 375 EIERVGGVHGIKVNVRVVAATNVDLRKAVAEGDFREDLFYRLNVYPIALPPLRERRDDIP 434
            IER+G    I +++RV+AAT +DL++A AEG FR+DL+YRLN+  + +PPLRERR+DIP
Sbjct: 264 VIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDLYYRLNIVTLTIPPLRERREDIP 323

Query: 435 LLINFFLGRFCQEYGRTPAGLTMRALKTLLGYDFAGNVRELQNLIERGLIASDEGQAIDL 494
            L + FL      YG+    LT   +++LL +D+ GNVREL+N  ER ++     Q    
Sbjct: 324 ALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNVRELRNAAERYVLLGKLAQ---- 379

Query: 495 VHIFRNESLPRDTYSLNHHGALRQASTAGAQQVPATSLLGTLNQPDKAFSIDELEQRLIQ 554
                        ++ +H               P + LLG LN+      + E E+ L++
Sbjct: 380 -------------FAESHE--------------PKSKLLG-LNE-----QVAEFEKSLLE 406

Query: 555 EALDKSEGNLAAASRLLGLSRAQFAYRLKKRQ 586
           + L +  G++ A    L L R     +++K Q
Sbjct: 407 QTLIECGGSIKATMERLHLPRKTLYDKMQKYQ 438