Pairwise Alignments

Query, 306 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

Subject, 311 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  212 bits (539), Expect = 1e-59
 Identities = 122/302 (40%), Positives = 181/302 (59%), Gaps = 20/302 (6%)

Query: 7   APIGRTLLQAQ-----SPWRRVLTEFFSSPTAVTGLVVLLIIVLVAALAPWIVVQNPYDL 61
           AP+  T  QA+     + WRR    F  + +A+ GL+V+L IV VA  APW+   + Y  
Sbjct: 23  APVPATPWQARVQQSLNQWRR----FRRNTSALFGLIVILFIVTVAIFAPWLATHDIY-- 76

Query: 62  MQLNVMDARMPPGSLNGDSGYTYWLGTDGQGRDLVSAIIYGLRISLWVGIGSALIAAVLG 121
                +  R+ P S        YWLGTD  GRD+ S +IYG RI+L++   +ALI   LG
Sbjct: 77  --AQNLQLRLAPVSRE------YWLGTDELGRDIYSRLIYGARITLYITGLTALIVGPLG 128

Query: 122 TLLGLVSAYVGGWLDALLMRLVDLLLSFPVILMALMILAWLGKGVGNVMLTLILLEWAYY 181
            L+G ++  VGGW D +LMR+VD+ L+FP +++AL  +A LG G+ N ++ + L  W   
Sbjct: 129 LLVGTLAGTVGGWTDTILMRIVDIFLAFPSLILALGFVAALGPGIENAIIAISLSAWPPI 188

Query: 182 ARTARGQALTESRREYVDAARGQGVGPLRIVIGHILPNCLPPLIVIGALQIARAITLEAT 241
           AR AR +AL+  + +YV A R QG   +RI++ HI+P CLP ++V   L +A  I   + 
Sbjct: 189 ARLARAEALSIRKMDYVAAVRLQGASQMRIILRHIIPMCLPSVVVRLTLNMAGIILTASG 248

Query: 242 LSFLGLGVPVTEPSLGLLIANGFQYMLSNEYWISLFPGLALLITIVAINLVGDRLRDVLN 301
           L FLGLG     P  G ++++G Q+M+++ + I+  PGL++L T +A NL GD LRDVL+
Sbjct: 249 LGFLGLGAQAPSPEWGAMLSSGRQFMMTH-WTIAAIPGLSILFTSLAFNLFGDGLRDVLD 307

Query: 302 PR 303
            R
Sbjct: 308 LR 309