Pairwise Alignments
Query, 913 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a
Subject, 1612 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2C3
Score = 191 bits (485), Expect = 3e-52
Identities = 208/780 (26%), Positives = 319/780 (40%), Gaps = 117/780 (15%)
Query: 54 AYDAQGNLTTVTNALGQVYALASFDSYGNPQSITDPNGVMTTLSYTPQGWLASLTIDSST 113
AYD QG L + LG V +D G ++ P+ T+ Y G+L + + +
Sbjct: 742 AYDEQGRLIAEQDPLGAVSEYR-YDDVGRLLALIPPDEAPTSYEYR-NGFLHARSRGKAV 799
Query: 114 TQYAYNEVGDLLQVTTADGNWVKYSYDDARRLIGVRNRLGESINYTLDPMGNRTAE---- 169
Y N GD++ DG +Y+YD +L+ G +T +G T E
Sbjct: 800 WSYRRNARGDVIASIDPDGQRTEYAYDAHGQLLARYEPDGGEHRFTWSRLGQLTEEVLPD 859
Query: 170 ---------------RTKDANGAVVHLQRRVFDELGRLIRVVGAGDQTQRYGYDLNDNQS 214
+D +GA+ H Q +D +GRL++V T+ + Y+
Sbjct: 860 GGRRCFAYDALGRLLSRRDEHGALTHYQ---WDAVGRLLQVTLPTGATRAWSYNAYGKVI 916
Query: 215 SDTTPRNNKTQQAF-DALNRVSKIVDPLQGVTALGYNSDDKV-TKVVDPRGVTTLYTYDS 272
++ + T+ + D L+ VS+ ++P Y+S + T++ + G Y
Sbjct: 917 AERDEQGRTTRYEYADDLHLVSRRLNPDGSELKYRYDSARLLLTEIENESGERYQLDYTP 976
Query: 273 LGNRISSKSPDGGTSTYAYDEANNLIRST----DARGVVTEYAYDALNRLTSKSYPATPA 328
G DG + YAYD +L+ T D +T Y DA RL K+ P A
Sbjct: 977 NGLIRQQVGFDGQRTAYAYDLNGHLLEKTEHGEDGSQRITRYQRDAAGRLRIKTLPDGQA 1036
Query: 329 LNIKFLYDQTADGNLGIGHLTGLQDSAG-VLTYTYDAKGNLVRQHRSVGVNSGDYYETLN 387
I++ YD +G L + D + L + YDA+ LV +H+ G TL
Sbjct: 1037 --IEYRYDD-------LGRLIQVDDGSDHPLAFEYDAQDRLVTEHQGWG--------TLR 1079
Query: 388 YGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNSLT 447
Y YDA L + P + L + S +T + L T ++ G
Sbjct: 1080 YRYDACGRLNHLRLPDDSQLDYHHASGGALTAIDLNGARLT-------EHRVDGGRERQR 1132
Query: 448 WGNGILLSRTYDQDYQLTQQQVGNWQTT--------YRYDADSNISETATSLWGAVQYEY 499
+ TYD+ +L Q V WQ Y Y N+ ++ + +Y+Y
Sbjct: 1133 RQGQLRSDYTYDEQGRLKAQTV--WQNPQQQLFWRDYAYSPRGNL-QSLSDQRNRRRYQY 1189
Query: 500 DALGRLTQEQTNSVK--KAYSFDATGNRTQRTTTNLTTSDATETQSLTYASDSNRVTSIN 557
D L RLT+ + + + +S D GN + TT NR+
Sbjct: 1190 DPLDRLTRIDFSHSEPPEHFSHDPAGNLLMQDRPGPTTLKG------------NRLLREG 1237
Query: 558 GSTLPVDAAGNHTQINGRR-------FTYDSQGRLSEVYQANIYKIADYKYNALGQRIIK 610
DA GN I RR + YDSQ RL V A+ + Y+Y+A G+RI
Sbjct: 1238 DRHYDYDAFGN--LIRERRGQALVSAYRYDSQHRLIGVTGAD-GRETSYRYDAFGRRI-- 1292
Query: 611 RAYVMGSQALAGTTTYLYDPSGKLIGQTLYDGNGQKTSGQYWFWLDNM-PLAQLTANFST 669
S+ + G TT + +L+ + N Y + PLA L
Sbjct: 1293 ------SKTVGGLTTEFFWQGDQLVAE-----NSPHHHRSYIYEPGTFRPLALLD----- 1336
Query: 670 LGEVSSSKLIYLHVDHLNTPRLATDSSQALLW--RWNSDAYGVGSPEEDVDGDGKATTIA 727
GE ++ Y H+DHL TP+ T+ + ++W R+N G G E G +
Sbjct: 1337 -GEGPDARPFYYHLDHLGTPQELTNPAGQIVWSARYN----GYGKLTELTHGSAEQLEQP 1391
Query: 728 LRFPGQIYDAQTQLSYNYYRDYNPDTGRYVQSDPIGLGGGLNTYAYVNANPMSFIDPMGL 787
LRF GQ +D ++ L YN +R YNP+TGRY+ DP L GGLN Y Y NP ++DP+GL
Sbjct: 1392 LRFQGQYFDPESGLHYNRHRYYNPETGRYLTPDPSKLAGGLNGYRY-TVNPTGWVDPLGL 1450
Score = 71.2 bits (173), Expect = 5e-16
Identities = 117/512 (22%), Positives = 189/512 (36%), Gaps = 95/512 (18%)
Query: 135 VKYSYDDARRLIGVRNRLGESINYTLDPMGNRTAERTKDANGAVVHLQRRVFDELGRLIR 194
V Y YD RLI N GES Y D + + A GA + + + R +R
Sbjct: 631 VSYRYDGRFRLIEATNAAGESERYDYDDQ--HVILQRQLAGGASFYWEWQGVGAASRCVR 688
Query: 195 VVGAGDQTQ-RYGYDLNDNQSSDTTPRNNKTQQAFDALNRVSKIVDPLQGVTALGYNSDD 253
+ Q RY + D + + ++ D R+ + V+P G Y+
Sbjct: 689 HWASFAQMDSRYTWG-EDGRVTVRHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQG 747
Query: 254 KVTKVVDPRGVTTLYTYDSLGNRISSKSPDGGTSTYAY-------------------DEA 294
++ DP G + Y YD +G ++ PD ++Y Y +
Sbjct: 748 RLIAEQDPLGAVSEYRYDDVGRLLALIPPDEAPTSYEYRNGFLHARSRGKAVWSYRRNAR 807
Query: 295 NNLIRSTDARGVVTEYAYDALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLT-GLQD 353
++I S D G TEYAYDA +L ++ P +F + + +G LT +
Sbjct: 808 GDVIASIDPDGQRTEYAYDAHGQLLARYEP--DGGEHRFTWSR-------LGQLTEEVLP 858
Query: 354 SAGVLTYTYDAKGNLVRQHRSVGVNSGDYYETLNYGYDAARNLVQIGYPSNINLTFTRNS 413
G + YDA G L+ + G +Y +DA L+Q+ P+ ++ N+
Sbjct: 859 DGGRRCFAYDALGRLLSRRDEHGA-------LTHYQWDAVGRLLQVTLPTGATRAWSYNA 911
Query: 414 AAQVTGVKLAIGNKTA-TLASNI-----SYQPFGPVNSLTWGNGILL--------SRTYD 459
+V + G T A ++ P G + + LL Y
Sbjct: 912 YGKVIAERDEQGRTTRYEYADDLHLVSRRLNPDGSELKYRYDSARLLLTEIENESGERYQ 971
Query: 460 QDYQ---LTQQQVG--NWQTTYRYDADSNISETATSLWGAVQYEYDALGRLTQEQTNSVK 514
DY L +QQVG +T Y YD + ++ E ++ D R+T+
Sbjct: 972 LDYTPNGLIRQQVGFDGQRTAYAYDLNGHLLE-------KTEHGEDGSQRITR------- 1017
Query: 515 KAYSFDATGNRTQRTTTNLTTSDATETQSLTYASDSNRVTSINGSTLPVDAAGNHTQING 574
Y DA G L + Q++ Y D G + VD +H
Sbjct: 1018 --YQRDAAG--------RLRIKTLPDGQAIEYRYDD------LGRLIQVDDGSDHP---- 1057
Query: 575 RRFTYDSQGRLSEVYQANIYKIADYKYNALGQ 606
F YD+Q RL +Q + Y+Y+A G+
Sbjct: 1058 LAFEYDAQDRLVTEHQG--WGTLRYRYDACGR 1087
Score = 67.0 bits (162), Expect = 9e-15
Identities = 99/445 (22%), Positives = 160/445 (35%), Gaps = 53/445 (11%)
Query: 186 FDELGRLIRVVGAGDQTQRYGYD----LNDNQSSDTTPRNNKTQQAFDALNRVSKIVDPL 241
+D RLI A +++RY YD + Q + + Q A V
Sbjct: 635 YDGRFRLIEATNAAGESERYDYDDQHVILQRQLAGGASFYWEWQGVGAASRCVRHWASFA 694
Query: 242 QGVTALGYNSDDKVTKVVDPRGVTTLYTYDSLGNRISSKSPDGGTSTYAYDEANNLIRST 301
Q + + D +VT V G +Y +D + PDGG AYDE LI
Sbjct: 695 QMDSRYTWGEDGRVT-VRHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQ 753
Query: 302 DARGVVTEYAYDALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLTGLQDSAGVLTYT 361
D G V+EY YD + RL + P + ++ G L V +Y
Sbjct: 754 DPLGAVSEYRYDDVGRLLALIPPDEAPTSYEYRN----------GFLHARSRGKAVWSYR 803
Query: 362 YDAKGNLVRQHRSVGVNSGDYYETLNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVK 421
+A+G+++ G + Y YDA L+ P FT + Q+T
Sbjct: 804 RNARGDVIASIDPDG-------QRTEYAYDAHGQLLARYEPDGGEHRFTWSRLGQLTEEV 856
Query: 422 LAIGNKTA----------------TLASNISYQPFGPVNSLTWGNGILLSRTYDQDYQLT 465
L G + ++ + G + +T G + +Y+ ++
Sbjct: 857 LPDGGRRCFAYDALGRLLSRRDEHGALTHYQWDAVGRLLQVTLPTGATRAWSYNAYGKVI 916
Query: 466 QQQVGNWQTT-YRYDADSNISETATSLWGA-VQYEYDALGRLTQEQTNSVKKAYSFDATG 523
++ +TT Y Y D ++ + G+ ++Y YD+ L E N + Y D T
Sbjct: 917 AERDEQGRTTRYEYADDLHLVSRRLNPDGSELKYRYDSARLLLTEIENESGERYQLDYTP 976
Query: 524 NRTQRTTTNLTTSDATETQSLTYASDSNRVTSINGSTLPVDAAGNHTQINGRRFTYDSQG 583
N R + Q YA D +NG L G R+ D+ G
Sbjct: 977 NGLIRQQVGF------DGQRTAYAYD------LNGHLLEKTEHGEDGSQRITRYQRDAAG 1024
Query: 584 RLSEVYQANIYKIADYKYNALGQRI 608
RL + + +Y+Y+ LG+ I
Sbjct: 1025 RL-RIKTLPDGQAIEYRYDDLGRLI 1048