Pairwise Alignments

Query, 913 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a

Subject, 1594 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens FW300-N2E3

 Score =  202 bits (515), Expect = 1e-55
 Identities = 213/789 (26%), Positives = 322/789 (40%), Gaps = 120/789 (15%)

Query: 54   AYDAQGNLTTVTNALGQVYALASFDSYGNPQSITDPNGVMTTLSYTPQGWLASLTIDSST 113
            AYD +G L    + LG V     +D  G   ++  P    T   Y   G+L +     + 
Sbjct: 699  AYDDKGRLIAEQDPLGAVTEYR-YDEVGRLVALIPPEDEPTAYEYR-DGFLHARYRGKAV 756

Query: 114  TQYAYNEVGDLLQVTTADGNWVKYSYDDARRLIGVR-----------NRLGESINYTLDP 162
             +Y  N  GD+ + T  DG+   Y YD   RL+ +R           N LG+ +  TL  
Sbjct: 757  WKYQRNAQGDVTEATDPDGHVTHYHYDTRGRLLSIRYPDTSRHVFVWNGLGQLLEETLPD 816

Query: 163  MGNRTAE--------RTKDANGAVVHLQRRVFDELGRLIRVVGAGDQTQRYGYDLNDNQS 214
             G R             +D +GAV H Q   +D +GRLI+       ++ + Y+      
Sbjct: 817  GGQRRFSYDALGRQITRQDEHGAVTHYQ---WDAVGRLIQTTLPSGASRAFSYNAYGKII 873

Query: 215  SDTTPRNNKTQQAF-DALNRVSKIVDPLQGVTALGYNSDDKV---TKVVDPRGVTTLYTY 270
            ++   +   T+  + D L+ VS+ ++     T L Y  D+ +   T++ +  G      Y
Sbjct: 874  AERDEQGQVTRYEYADDLHLVSRRINA--DGTQLRYRYDNALLLLTEIENESGEKYQLDY 931

Query: 271  DSLGNRISSKSPDGGTSTYAYDEANNLIRST----DARGVVTEYAYDALNRLTSKSYPAT 326
               G        DG  + YAYD   +L+  T    D   ++T Y  D+  RL  K+ P  
Sbjct: 932  TPNGLIRQETGFDGRRTAYAYDLNGHLLEKTEFGDDGSTLITTYQRDSAGRLLVKTLP-- 989

Query: 327  PALNIKFLYDQTADGNLGIGHLTGLQDSAG-VLTYTYDAKGNLVRQHRSVGVNSGDYYET 385
              +N+++ YD       G+G L  + D     L + YD +  L+ +H+  G        T
Sbjct: 990  DGVNVEYGYD-------GLGRLVSVDDGHDHPLEFEYDQQDRLITEHQGWG--------T 1034

Query: 386  LNYGYDAARNLVQIGYPSNINLTFTRNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNS 445
            L YGYDA   L ++  P N  L +       ++ + L          + ++   F     
Sbjct: 1035 LRYGYDACGQLNRLRLPDNSTLDYHHAKGGALSAIDLN--------GTRLTTHVFNAGRE 1086

Query: 446  LTWGNGILLSRTYDQDYQLTQQQVGN------WQTTYRYDADSNISETATSLWGAVQYEY 499
                 G LLS+ +  +    Q    N      +   Y Y  + N++  A S  G   Y Y
Sbjct: 1087 RQRQQGQLLSQYHHDEQGRLQSHAVNQSDRPLYMRHYSYAVNGNLAAIADSRHGQRSYYY 1146

Query: 500  DALGRLTQEQTNSVKKAYSF--DATGNRTQRTTTNLTTSDATETQSLTYASDSNRVTSIN 557
            DAL RLT+ +    + A SF  D  GN        L T               NR+    
Sbjct: 1147 DALNRLTRVRHARGEPAQSFEHDPAGNLQMHDRPGLATIKG------------NRLLLQG 1194

Query: 558  GSTLPVDAAGN---HTQINGRR----FTYDSQGRLSEVYQANIYKIADYKYNALGQRIIK 610
                  DA GN     +  G++    + YD Q RL  +   +  K A Y+Y+A G+RI K
Sbjct: 1195 DRHYDYDAFGNLIFERRGTGQKLVTEYRYDCQHRLIGITLPD-GKTASYRYDAFGRRIAK 1253

Query: 611  RAYVMGSQALAGTTTYLYDPSGKLIGQTLYDGNGQKTSGQYWFWLDNM-PLAQLTANFST 669
                     + G TT  +     L+ +      G++    Y +   +  PLA L      
Sbjct: 1254 --------TVDGHTTEFFWQGDNLVAE-----RGKEHYRSYVYEPGSFRPLAMLDG---- 1296

Query: 670  LGEVSSSKLIYLHVDHLNTPRLATDSSQALLWRWNSDAYGVGSP-----EEDVDGDGKAT 724
             G   +    Y  +DHL TP+  TD S  ++W     AYG  +      EE ++      
Sbjct: 1297 FGPRKACPFYY-QLDHLGTPQELTDYSGEIVWSATYKAYGKLASLKHFGEEQLEQP---- 1351

Query: 725  TIALRFPGQIYDAQTQLSYNYYRDYNPDTGRYVQSDPIGLGGGLNTYAYVNANPMSFIDP 784
               LRF GQ +DA++ L YN +R YNPD GRY+  DPI L GGLN Y Y   NP  +IDP
Sbjct: 1352 ---LRFQGQYFDAESGLHYNRHRYYNPDIGRYLTPDPIKLAGGLNGYQY-TPNPTGWIDP 1407

Query: 785  MGLAATALP 793
            +GL     P
Sbjct: 1408 LGLNGNCPP 1416



 Score = 68.2 bits (165), Expect = 4e-15
 Identities = 104/488 (21%), Positives = 162/488 (33%), Gaps = 119/488 (24%)

Query: 186 FDELGRLIRVVGAGDQTQRYGYDLN----------------DNQSSDTTPRNNKTQQAFD 229
           +DE  +LI    A  +++RY YD                  + + S    R  +   +F 
Sbjct: 592 YDERDQLIEATNAAGESERYDYDDQQVILQRQLAGGASFFWEWERSGKAARCIRHWASFS 651

Query: 230 ALNRVSKIVDPLQGVTALGYNSDDKVTKVVDPRGVTTLYTYDSLGNRISSKSPDGGTSTY 289
            ++    + D   GVT L  +  ++V            Y +D     +     +GG    
Sbjct: 652 QMD-AQYVWDDQGGVTVLNIDGSEEV------------YVHDDRARLVRKVDLEGGEHLK 698

Query: 290 AYDEANNLIRSTDARGVVTEYAYDALNRLTSKSYPATPALNIKFLYDQTADGNLGIGHLT 349
           AYD+   LI   D  G VTEY YD + RL +   P           D+        G L 
Sbjct: 699 AYDDKGRLIAEQDPLGAVTEYRYDEVGRLVALIPPE----------DEPTAYEYRDGFLH 748

Query: 350 GLQDSAGVLTYTYDAKGNLVRQHRSVGVNSGDYYETLNYGYDAARNLVQIGYPSNINLTF 409
                  V  Y  +A+G++       G          +Y YD    L+ I YP      F
Sbjct: 749 ARYRGKAVWKYQRNAQGDVTEATDPDG-------HVTHYHYDTRGRLLSIRYPDTSRHVF 801

Query: 410 TRNSAAQVTGVKLAIGNKTATLASNISYQPFGPVNSLTWGNGILLSRTYDQDYQLTQQQV 469
             N   Q+    L  G +        SY   G                     Q+T+Q  
Sbjct: 802 VWNGLGQLLEETLPDGGQ-----RRFSYDALG--------------------RQITRQDE 836

Query: 470 GNWQTTYRYDADSNISETATSLWGAVQYEYDALGRL---TQEQTNSVKKAYSFDATGNRT 526
               T Y++DA   + +T      +  + Y+A G++     EQ    +  Y+ D      
Sbjct: 837 HGAVTHYQWDAVGRLIQTTLPSGASRAFSYNAYGKIIAERDEQGQVTRYEYADDL----- 891

Query: 527 QRTTTNLTTSDATETQSLTYASDS-----NRVTSINGSTLPVDAAGN-----HTQINGRR 576
               +    +D T+   L Y  D+       + + +G    +D   N      T  +GRR
Sbjct: 892 -HLVSRRINADGTQ---LRYRYDNALLLLTEIENESGEKYQLDYTPNGLIRQETGFDGRR 947

Query: 577 --FTYDSQGRLSEVYQANIYKIADYKYNALGQRIIKRAYVMGSQALAGTTTYLYDPSGKL 634
             + YD  G L E  +                         G       TTY  D +G+L
Sbjct: 948 TAYAYDLNGHLLEKTE------------------------FGDDGSTLITTYQRDSAGRL 983

Query: 635 IGQTLYDG 642
           + +TL DG
Sbjct: 984 LVKTLPDG 991