Pairwise Alignments

Query, 656 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  453 bits (1165), Expect = e-131
 Identities = 259/649 (39%), Positives = 369/649 (56%), Gaps = 21/649 (3%)

Query: 2   RLFLCEKPSQAKDIAAALGATRRGD-GCWVGANAT-VTWCIGHLLETAPPDAYDARYKRW 59
           RLF+ EKPS A+ IA AL    + + GC   AN   VTWCIGHLLE   PDAYD RYK+W
Sbjct: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62

Query: 60  VLEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEATELVIATDADREGEMIARELIEHCRY 119
            + DLPI+PE+W++  +  ++ Q   V++LL EAT+++ A D DREG+++  E+I++C+ 
Sbjct: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122

Query: 120 ----RGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLFT 175
               +  +QRL +S L+ +++++AL  L+   +   L  SAL RSRADWL GMNMSR +T
Sbjct: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182

Query: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHDNQA----FIA 231
           LLG+++GYQGVL VGRVQTP L LVV RD  I +F+P  Y+ +D  + + N        A
Sbjct: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242

Query: 232 QWRAPSDAC----DDQDRCLNQALAQQAAQAMRAAASARLVKLRTERIREAAPLPFDLGT 287
           +W+ PS+AC    D++ R  N+ L    A  + A   A + +   ++ ++AAPLP+ L  
Sbjct: 243 RWK-PSEACLPWQDEEGRVTNRKLVDNVASRI-ANQPATVTESEQDQTKQAAPLPYSLSA 300

Query: 288 LQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAALCKADP 347
           LQ   +K+    AQ+ LD+ QSLYE HK+ITYPRSDC YLP     +A  ++AA+     
Sbjct: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360

Query: 348 ALANLSPHLDPQRRSRAWNDSKVTAHHGIIPTAAVRGVERLSGKPRAVYTLIRARYLAQF 407
            +       D   RS+AWNDSKV AHH IIPT     V  LSG    VY LI  +YL QF
Sbjct: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420

Query: 408 LPNHEYDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREAPAPQPLPALFQG 467
            P   Y   +  F+ AG    A G+Q++  GWK      L   +  +      +P L  G
Sbjct: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPVG 475

Query: 468 CECAVAEVILKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAG 527
                 E  +K   T+PP+ FTE  L++AM  +A+ V D  LK+ L++T G+GTEATRAG
Sbjct: 476 IVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAG 535

Query: 528 IIQGLLDRGYLTKQGKSLCAAPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEE 587
           I+  L  RG L +  K + + PA   LI A+P     P  TA WE  L  +     + + 
Sbjct: 536 ILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQP 595

Query: 588 FVAKQAAWMSKQVSRCVGMRMSISGPASPAGVKPPWKKKRKTTTRVAKT 636
           F+      + + + +     + +S  A PA  KP +K+ R+     A+T
Sbjct: 596 FMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSKART 644