Pairwise Alignments

Query, 656 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

Subject, 704 a.a., DNA topoisomerase III (RefSeq) from Shewanella sp. ANA-3

 Score =  427 bits (1098), Expect = e-124
 Identities = 265/687 (38%), Positives = 375/687 (54%), Gaps = 35/687 (5%)

Query: 1   MRLFLCEKPSQAKDIAAALGAT-RRGDGCWVGANAT-VTWCIGHLLETAPPDAYDARYKR 58
           M L++ EKPS  + IA  L    ++GDG    A    V+WC+GHLLE A PDAY+  +K 
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGDGFIEDAQGNCVSWCVGHLLEQAEPDAYNPEFKS 60

Query: 59  WVLEDLPIVPEKWKMLVKPRTASQFKAVKRLLGEATELVIATDADREGEMIARELIEHCR 118
           W  E LPIVPEKW++  K  T SQ   +K+L+ +A  LV A D DREG+++  E+I +  
Sbjct: 61  WKFEHLPIVPEKWQLKPKAATRSQLTVLKKLVKQADTLVNAGDPDREGQLLVDEVIAYLG 120

Query: 119 YRGP----IQRLWLSALDDASIRKALAALKPGADTFSLYHSALGRSRADWLIGMNMSRLF 174
             G      QRL +S L+  ++++AL+ L+   +   L  SAL RSRADWL GMNM+R +
Sbjct: 121 VTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAIDVRLLHD-NQAFIAQW 233
           T+ G++ GYQGVL VGRVQTP L L+V RD  IANF   P++ +   L+ D +Q F A+W
Sbjct: 181 TIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIANFQSKPFYEVLAHLVTDKDQTFTAKW 240

Query: 234 RAPSDAC----DDQDRCLNQALAQQAAQAMRAAASARLVKLRTERIREAAPLPFDLGTLQ 289
           + PS+AC    D++ R L + LAQ   + +     A++ +L T+  ++  PLP+ L  LQ
Sbjct: 241 Q-PSEACLPYMDEEGRVLAKGLAQNVVRRI-TDKPAKVTQLSTKDKQQNPPLPYSLSALQ 298

Query: 290 EICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGIIAALCKADPAL 349
              +K+ G+ A++ LD  QSLYE HK+ITYPRSD  YLP  QH  A+G++AA+    P L
Sbjct: 299 IDAAKRFGMSAKDVLDTCQSLYERHKLITYPRSDSRYLPTEQHALASGVLAAIMGGAPEL 358

Query: 350 ANLSPHLDPQRRSRAWNDSKVTAHHGIIPTAAVRGVERLSGKPRAVYTLIRARYLAQFLP 409
              +   +P+ +S+AW+D KV AHH IIPT     +  LS + R +Y  I  +YLAQF P
Sbjct: 359 VAHAEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLAGLSQRERQLYLHIARQYLAQFYP 418

Query: 410 NHEYDRTQADFDCAGHALRAVGKQIVEPGWKR--------------AMPEALAPAKGREA 455
            + Y  T  +    G   +   KQ    GWK+              A   A       E 
Sbjct: 419 AYCYSETAVEVTIEGGLFKTKAKQDKSLGWKQLFAREENERKDASSAASFAQGDKDAEEG 478

Query: 456 PAPQPLPALFQG--CECAVAEVILKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKL 513
                LP L  G    C   E++ K   TQPPK FT+  L+ AM  + + V DP +++ L
Sbjct: 479 EYVGQLPPLTLGQVLHCHQGELVEKQ--TQPPKAFTDATLLSAMTGINRYVTDPEIRKIL 536

Query: 514 KDTTGIGTEATRAGIIQGLLDRGYLTKQGKSLCAAPAAFSLIDAVPRAIADPGTTAIWEQ 573
           K+T G+GTEATRAGII+ L  RG++ +QGKS+ A      LI+++P +   P  TA+WE 
Sbjct: 537 KETDGLGTEATRAGIIELLFKRGFIQRQGKSIVATEIGKGLINSLPISATTPDMTALWEA 596

Query: 574 ALDMVQSGEMSLEEFVAKQAAWMSKQVSRCVGMRMSISGPASPAGVKPPWKKK---RKTT 630
           +L+ +   E+S   F+      ++  +        S        G K    KK   RK  
Sbjct: 597 SLNGICHKEISYHGFMQPLLGTLNNLIENAGAQLPSALNGLKGQGFKRAATKKSGYRKAG 656

Query: 631 TR-VAKTATTDTAAKKPRRAVRPAAKA 656
           TR  A      T AKK   +   AA +
Sbjct: 657 TRGAAGGKKAGTGAKKGNASNSAAASS 683