Pairwise Alignments
Query, 710 a.a., PAS from Pseudomonas syringae pv. syringae B728a
Subject, 438 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B
Score = 328 bits (842), Expect = 3e-94
Identities = 183/437 (41%), Positives = 252/437 (57%), Gaps = 49/437 (11%)
Query: 266 KVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSSLQYREL 325
+ A+ S A+IEF G ++ AN NFL++ GY L++I G+HHR+FC+ E+ +S +Y+
Sbjct: 23 RAAAVSASTAMIEFLPDGTIVTANDNFLSLVGYRLEDIQGKHHRIFCTPEYANSHEYKAF 82
Query: 326 WEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVTVAKETSVED 385
W L GE+ + + R +DGK +W+ A+YNPI + +GK ++K A DVT E E
Sbjct: 83 WRSLAAGEHASGRFLRLGRDGKNLWLGASYNPIRNEEGKVVSVLKLAADVTEIVEIENEQ 142
Query: 386 QGKVNAIDRAQAVIEFDMAGNIITANANFLKALGYGLLEIKGKHHRIFCEEEYVRGTEYR 445
Q +NAIDR+ AVIEF G +I AN NFL GY L EIKGKHHR+FC EY EY+
Sbjct: 143 QSMINAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKGKHHRLFCAPEYAASQEYK 202
Query: 446 EFWHGLGQGEFYSGRFMRVSKYGQKIWIQATYSPIFDHDGLPFKVVKFATDITRQVEMEQ 505
FW L QGEF++GRF R K G+ IW+ ATY+P++D G +K+VKFA DIT +V +Q
Sbjct: 203 HFWSRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGELYKIVKFANDITERVNQQQ 262
Query: 506 AIEAKTRAMGESVKALMNAISYVAQSTETATDLARMTREQARSGSQTLVKASDAMGMIAK 565
A ES A++ A D+A T ARSG+Q + + + IA+
Sbjct: 263 A---------ESAAAVL------------AYDIALTTDANARSGAQVVQSTVEVVRGIAE 301
Query: 566 ----SAEGIQD----------IIQVISEIASQTNMLAFNAAIEAARAGEHGLGFSVVADE 611
+A GI+D I+Q I IA QTN+LA NAAIEAARAGE G GF+VVADE
Sbjct: 302 EINLAARGIEDVSNQSEKIGNIVQTIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADE 361
Query: 612 VRKLAEKSSRATKEINKLIL--------------ETVSRIESGNEISRSAGEAFEHIVEG 657
VR LA +++ AT EI ++ ++ ++E G ++ AGEA E I EG
Sbjct: 362 VRSLAARTANATVEIVDVVRQNQVLSQAAVANMEQSKHKVEQGVALAVEAGEAIEQIREG 421
Query: 658 VMQTTQAIDGINTATEK 674
Q A+ +K
Sbjct: 422 AQQVVAAVQEFKLQLDK 438
Score = 270 bits (690), Expect = 1e-76
Identities = 127/248 (51%), Positives = 173/248 (69%), Gaps = 1/248 (0%)
Query: 25 AIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHASSVEYVTFWEK 84
A+ S AMIEF DG I+ AN NFL VGYRL+++QG+HHR+FCTPE+A+S EY FW
Sbjct: 26 AVSASTAMIEFLPDGTIVTANDNFLSLVGYRLEDIQGKHHRIFCTPEYANSHEYKAFWRS 85
Query: 85 LGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQRKSNAEYEGK 144
L G G++ RLG++G+ +WL A+YNP+ +E+G V+K A DVT + E +
Sbjct: 86 LAAGEHASGRFLRLGRDGKNLWLGASYNPIRNEEGKVVSVLKLAADVTEIVEIENEQQSM 145
Query: 145 VAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNSPAYRAFW 204
+ AIDRS +IEF +G V+ ANENFL V GYRLDEI+G+HHR+FC +Y S Y+ FW
Sbjct: 146 INAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKGKHHRLFCAPEYAASQEYKHFW 205
Query: 205 AKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTES-RIRQAES 263
++L +GE+ +G ++R K GR +W+SATYNP++D G YK+VKFAND+TE +QAES
Sbjct: 206 SRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGELYKIVKFANDITERVNQQQAES 265
Query: 264 AGKVTAIE 271
A V A +
Sbjct: 266 AAAVLAYD 273
Score = 262 bits (669), Expect = 3e-74
Identities = 125/288 (43%), Positives = 188/288 (65%), Gaps = 11/288 (3%)
Query: 126 KFATDVTAQRKSNAEYEGKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQH 185
K + + R Y+ + AA+ S +IEF +G ++ AN+NFL ++GYRL++IQG+H
Sbjct: 5 KLKQSLASYRSEIQRYQARAAAVSASTAMIEFLPDGTIVTANDNFLSLVGYRLEDIQGKH 64
Query: 186 HRMFCEDDYLNSPAYRAFWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYK 245
HR+FC +Y NS Y+AFW L GE+ SG + R+G++G+ LW+ A+YNPI + +G+
Sbjct: 65 HRIFCTPEYANSHEYKAFWRSLAAGEHASGRFLRLGRDGKNLWLGASYNPIRNEEGKVVS 124
Query: 246 VVKFANDVTESRIRQAESAGKVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVG 305
V+K A DVTE + E + AI+RS AVIEF G+V+ AN NFLAV GY LDEI G
Sbjct: 125 VLKLAADVTEIVEIENEQQSMINAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKG 184
Query: 306 EHHRMFCSEEFVSSLQYRELWEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKP 365
+HHR+FC+ E+ +S +Y+ W +L +GE+ ++R+ K G+ IW+ ATYNP++DA+G+
Sbjct: 185 KHHRLFCAPEYAASQEYKHFWSRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGEL 244
Query: 366 YKIVKFALDVTVAKETSVEDQGKVNAIDRAQAVIEFDMAGNIITANAN 413
YKIVKFA D+T ++ + A AV+ +D+A +T +AN
Sbjct: 245 YKIVKFANDIT--------ERVNQQQAESAAAVLAYDIA---LTTDAN 281
Score = 150 bits (378), Expect = 2e-40
Identities = 70/136 (51%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Query: 15 LELDLHSLMTAIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHAS 74
+E + S++ AIDRS A+IEF DG ++RAN NFL GYRLDE++G+HHR+FC PE+A+
Sbjct: 138 IENEQQSMINAIDRSMAVIEFTTDGEVIRANENFLAVTGYRLDEIKGKHHRLFCAPEYAA 197
Query: 75 SVEYVTFWEKLGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQ 134
S EY FW +L +G F G+++R K GR IWL ATYNPV+D +G +K+VKFA D+T +
Sbjct: 198 SQEYKHFWSRLNQGEFFTGRFQRQDKLGRTIWLSATYNPVYDARGELYKIVKFANDITER 257
Query: 135 -RKSNAEYEGKVAAID 149
+ AE V A D
Sbjct: 258 VNQQQAESAAAVLAYD 273
Score = 121 bits (304), Expect = 6e-32
Identities = 57/136 (41%), Positives = 84/136 (61%)
Query: 386 QGKVNAIDRAQAVIEFDMAGNIITANANFLKALGYGLLEIKGKHHRIFCEEEYVRGTEYR 445
Q + A+ + A+IEF G I+TAN NFL +GY L +I+GKHHRIFC EY EY+
Sbjct: 21 QARAAAVSASTAMIEFLPDGTIVTANDNFLSLVGYRLEDIQGKHHRIFCTPEYANSHEYK 80
Query: 446 EFWHGLGQGEFYSGRFMRVSKYGQKIWIQATYSPIFDHDGLPFKVVKFATDITRQVEMEQ 505
FW L GE SGRF+R+ + G+ +W+ A+Y+PI + +G V+K A D+T VE+E
Sbjct: 81 AFWRSLAAGEHASGRFLRLGRDGKNLWLGASYNPIRNEEGKVVSVLKLAADVTEIVEIEN 140
Query: 506 AIEAKTRAMGESVKAL 521
++ A+ S+ +
Sbjct: 141 EQQSMINAIDRSMAVI 156