Pairwise Alignments

Query, 710 a.a., PAS from Pseudomonas syringae pv. syringae B728a

Subject, 439 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25-INTG

 Score =  307 bits (787), Expect = 6e-88
 Identities = 175/428 (40%), Positives = 239/428 (55%), Gaps = 24/428 (5%)

Query: 262 ESAGKVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSSLQ 321
           ES  K+ AI RS A+IEFD +G +L AN NF    GY  +EI G+HHR+FC E +  +  
Sbjct: 22  ESNAKLAAISRSMAMIEFDPSGVILDANDNFCKAMGYSAEEICGKHHRLFCDEAYTQTDA 81

Query: 322 YRELWEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVTVAKET 381
           Y +LW  L RGE  +  + R  K G+E+W++A+Y P+ D       ++K A D++     
Sbjct: 82  YAKLWLDLARGEALSGTFMRLNKQGQEVWLEASYMPVLDKDNHVLSVIKVASDISARVHH 141

Query: 382 SVEDQGKVNAIDRAQAVIEFDMAGNIITANANFLKALGYGLLEIKGKHHRIFCEEEYVRG 441
             E+Q  ++AI R+ AVIEF   G I+ AN NFLK + Y L EI G+HH +FC    V  
Sbjct: 142 EHENQSLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSLFCHRSEVES 201

Query: 442 TEYREFWHGLGQGEFYSGRFMRVSKYGQKIWIQATYSPIFDHDGLPFKVVKFATDITRQV 501
             Y+ FW  L +GE++S RF R +KYG+ ++++A+Y+PIFD +G  +KVVKFA+DIT QV
Sbjct: 202 PAYKAFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQV 261

Query: 502 EMEQAIEAKTRAMGESVKALMNAISYVAQSTETATDLARMTREQARSGSQTLVKASDAMG 561
              ++      A      A     S V Q T    +   +   QA      + K SD +G
Sbjct: 262 TTLRSAADSAHATSVQNDACARKGSEVVQQTVQIIEEISLDLNQAAVSIDAVSKQSDIIG 321

Query: 562 MIAKSAEGIQDIIQVISEIASQTNMLAFNAAIEAARAGEHGLGFSVVADEVRKLAEKSSR 621
                      I+Q I  IA QTNMLA NAAIEAARAGEHG GF+VVADEVR LA ++S+
Sbjct: 322 A----------IVQTIRSIAEQTNMLALNAAIEAARAGEHGRGFAVVADEVRSLAGRTSQ 371

Query: 622 ATKEI-------NKLILETVSRIES-------GNEISRSAGEAFEHIVEGVMQTTQAIDG 667
           AT EI       + L L  VS ++S       G E++  AG+    I EG      AI  
Sbjct: 372 ATVEIVDVVRKNHDLSLSAVSSMQSSLSRTGLGVELANEAGQVILEIQEGSRHVVDAIGQ 431

Query: 668 INTATEKQ 675
            N+  + Q
Sbjct: 432 FNSTLQLQ 439



 Score =  242 bits (618), Expect = 2e-68
 Identities = 116/251 (46%), Positives = 162/251 (64%), Gaps = 2/251 (0%)

Query: 23  MTAIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHASSVEYVTFW 82
           + AI RS AMIEFD  G IL AN NF   +GY  +E+ G+HHR+FC   +  +  Y   W
Sbjct: 27  LAAISRSMAMIEFDPSGVILDANDNFCKAMGYSAEEICGKHHRLFCDEAYTQTDAYAKLW 86

Query: 83  EKLGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQRKSNAEYE 142
             L +G    G + RL K G+E+WL+A+Y PV D+  +   V+K A+D++A+     E +
Sbjct: 87  LDLARGEALSGTFMRLNKQGQEVWLEASYMPVLDKDNHVLSVIKVASDISARVHHEHENQ 146

Query: 143 GKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNSPAYRA 202
             + AI RS  +IEF   G++LNANENFLK + Y LDEI GQHH +FC    + SPAY+A
Sbjct: 147 SLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSLFCHRSEVESPAYKA 206

Query: 203 FWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTE--SRIRQ 260
           FWA L RGEY S  ++R  K G+ L++ A+YNPIFD +GR YKVVKFA+D+T+  + +R 
Sbjct: 207 FWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQVTTLRS 266

Query: 261 AESAGKVTAIE 271
           A  +   T+++
Sbjct: 267 AADSAHATSVQ 277



 Score =  237 bits (605), Expect = 8e-67
 Identities = 110/237 (46%), Positives = 155/237 (65%)

Query: 140 EYEGKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNSPA 199
           E   K+AAI RS  +IEFD +G +L+AN+NF K +GY  +EI G+HHR+FC++ Y  + A
Sbjct: 22  ESNAKLAAISRSMAMIEFDPSGVILDANDNFCKAMGYSAEEICGKHHRLFCDEAYTQTDA 81

Query: 200 YRAFWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTESRIR 259
           Y   W  L RGE  SG + R+ K G+E+W+ A+Y P+ D D     V+K A+D++     
Sbjct: 82  YAKLWLDLARGEALSGTFMRLNKQGQEVWLEASYMPVLDKDNHVLSVIKVASDISARVHH 141

Query: 260 QAESAGKVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSS 319
           + E+   + AI RS AVIEF   G++L+AN NFL    Y LDEIVG+HH +FC    V S
Sbjct: 142 EHENQSLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSLFCHRSEVES 201

Query: 320 LQYRELWEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVT 376
             Y+  W  L RGEY ++ ++RK K GK ++++A+YNPIFD  G+ YK+VKFA D+T
Sbjct: 202 PAYKAFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDIT 258



 Score =  115 bits (288), Expect = 4e-30
 Identities = 55/119 (46%), Positives = 75/119 (63%)

Query: 16  ELDLHSLMTAIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHASS 75
           E +  SL+ AI RS A+IEF   G IL AN NFL  V Y LDE+ G+HH +FC      S
Sbjct: 142 EHENQSLIDAIGRSMAVIEFTPQGQILNANENFLKTVQYSLDEIVGQHHSLFCHRSEVES 201

Query: 76  VEYVTFWEKLGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQ 134
             Y  FW  L +G +   +++R  K G+ ++L+A+YNP+FD  G  +KVVKFA+D+T Q
Sbjct: 202 PAYKAFWASLNRGEYHSHRFERKNKYGKTLFLEASYNPIFDTNGRLYKVVKFASDITDQ 260