Pairwise Alignments

Query, 710 a.a., PAS from Pseudomonas syringae pv. syringae B728a

Subject, 602 a.a., methyl-accepting chemotaxis protein from Lysobacter sp. OAE881

 Score =  400 bits (1029), Expect = e-116
 Identities = 231/561 (41%), Positives = 327/561 (58%), Gaps = 57/561 (10%)

Query: 140 EYEGKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNSPA 199
           + EG++ AIDR Q +IEFDL+G + +ANENFL+ LGYRLDEIQG+HH MF + ++  S  
Sbjct: 44  DMEGRIRAIDRVQAVIEFDLDGTITHANENFLRTLGYRLDEIQGRHHSMFVDREHAGSDE 103

Query: 200 YRAFWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTESRIR 259
           YRAFWAKL RGE+D+G+Y+R GK+GRE+WI A+YNP+FD  GRP KVVKFA D+T  +++
Sbjct: 104 YRAFWAKLARGEFDAGQYRRFGKDGREIWIQASYNPVFDSAGRPRKVVKFATDITAQKMQ 163

Query: 260 QAESAGKVTAIERSQAVIEFDLTGKVLHANRNFLAVFGYDLDEIVGEHHRMFCSEEFVSS 319
            A+ AG++ AI +SQAVIEFDLTG++L AN NFLA  GY LDE+ G+HH MF  E + +S
Sbjct: 164 AADFAGQLAAISKSQAVIEFDLTGRILSANENFLATTGYTLDEVRGQHHSMFAEESYRNS 223

Query: 320 LQYRELWEKLGRGEYDANEYKRKRKDGKEIWIQATYNPIFDAQGKPYKIVKFALDVTVAK 379
             YRE W KLGRG++DA  Y+R  K G+E+WIQA+YNPIFD  GKP+K+VK+A D+T   
Sbjct: 224 AGYREFWTKLGRGQFDAGVYRRLGKGGREVWIQASYNPIFDMNGKPFKVVKYAADITAQV 283

Query: 380 ETSVEDQGKVNAIDRAQAVI----EFDMAGNIITAN-ANFLKALGYGLLEIKGKHHRIFC 434
               + Q    A+++   V+    + D+   I TA+    +  L  G+  +      I  
Sbjct: 284 R---DTQALQRAVEQTHVVVNAAKDGDLTRRIETADKTGSIAQLCEGINSLVDAMAGILG 340

Query: 435 EEEYVRGTEYREFWHGLGQGEFYSGRF-MRVSKYGQKIWIQATYSPIFDHDGLPFKVVKF 493
           + +    T       G G  E  +G   +      Q   ++ T S + +        V+ 
Sbjct: 341 QIKVAADT------IGEGAREIAAGNTDLSQRTESQAASLEETASSMDEIT----STVRH 390

Query: 494 ATDITRQVEMEQAIEAKTRAM--GESVKALMNAISYVAQSTETATDLARMTREQARSGSQ 551
             D  RQ   + AIEA   A   G++V  +++ +S ++QS++                  
Sbjct: 391 TADNARQAN-QLAIEATVIASRGGDAVHGVVDTMSQISQSSKK----------------- 432

Query: 552 TLVKASDAMGMIAKSAEGIQDIIQVISEIASQTNMLAFNAAIEAARAGEHGLGFSVVADE 611
                             I DII VI  IA QTN+LA NAA+EAARAGE G GF+VVA E
Sbjct: 433 ------------------IADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 474

Query: 612 VRKLAEKSSRATKEINKLILETVSRIESGNEISRSAGEAFEHIVEGVMQTTQAIDGINTA 671
           VR LA++S+ A KEI  LI ++V R+ +G  +  SAG   + IV  V +    I  I+ A
Sbjct: 475 VRSLAQRSATAAKEIKHLIGDSVERVGAGTRLVESAGRTMDEIVGSVKRVADLIGDISAA 534

Query: 672 TEKQRLSAQEVETLIVELHKA 692
           T +Q    +++   I  + ++
Sbjct: 535 TLQQSAGIEQINQAIAHMDQS 555



 Score =  332 bits (852), Expect = 2e-95
 Identities = 157/277 (56%), Positives = 207/277 (74%), Gaps = 7/277 (2%)

Query: 18  DLHSLMTAIDRSQAMIEFDLDGNILRANTNFLDCVGYRLDEVQGRHHRMFCTPEHASSVE 77
           D+   + AIDR QA+IEFDLDG I  AN NFL  +GYRLDE+QGRHH MF   EHA S E
Sbjct: 44  DMEGRIRAIDRVQAVIEFDLDGTITHANENFLRTLGYRLDEIQGRHHSMFVDREHAGSDE 103

Query: 78  YVTFWEKLGKGAFDEGQYKRLGKNGREIWLQATYNPVFDEQGNPFKVVKFATDVTAQRKS 137
           Y  FW KL +G FD GQY+R GK+GREIW+QA+YNPVFD  G P KVVKFATD+TAQ+  
Sbjct: 104 YRAFWAKLARGEFDAGQYRRFGKDGREIWIQASYNPVFDSAGRPRKVVKFATDITAQKMQ 163

Query: 138 NAEYEGKVAAIDRSQGIIEFDLNGRVLNANENFLKVLGYRLDEIQGQHHRMFCEDDYLNS 197
            A++ G++AAI +SQ +IEFDL GR+L+ANENFL   GY LDE++GQHH MF E+ Y NS
Sbjct: 164 AADFAGQLAAISKSQAVIEFDLTGRILSANENFLATTGYTLDEVRGQHHSMFAEESYRNS 223

Query: 198 PAYRAFWAKLERGEYDSGEYKRIGKNGRELWISATYNPIFDPDGRPYKVVKFANDVTESR 257
             YR FW KL RG++D+G Y+R+GK GRE+WI A+YNPIFD +G+P+KVVK+A D+T ++
Sbjct: 224 AGYREFWTKLGRGQFDAGVYRRLGKGGREVWIQASYNPIFDMNGKPFKVVKYAADIT-AQ 282

Query: 258 IRQAESAGKVTAIERSQAVI----EFDLTGKVLHANR 290
           +R  ++  +  A+E++  V+    + DLT ++  A++
Sbjct: 283 VRDTQALQR--AVEQTHVVVNAAKDGDLTRRIETADK 317



 Score = 25.4 bits (54), Expect = 0.009
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 497 ITRQVEMEQAIEAKTRAMGESVKALMNAISYVAQSTETATDLARMTREQARSGSQTLVKA 556
           + R  ++   I A T      ++ +  AI+++ QST+    L       ARS  +   +A
Sbjct: 521 VKRVADLIGDISAATLQQSAGIEQINQAIAHMDQSTQQNAALVEEASAAARSMEE---QA 577

Query: 557 SDAMGMIA 564
           SD M  +A
Sbjct: 578 SDLMQTVA 585