Pairwise Alignments

Query, 339 a.a., tRNA-U16,U17-dihydrouridine synthase from Pseudomonas syringae pv. syringae B728a

Subject, 329 a.a., tRNA-dihydrouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score =  387 bits (995), Expect = e-112
 Identities = 191/319 (59%), Positives = 238/319 (74%), Gaps = 1/319 (0%)

Query: 19  LSRRFSVAPMMDWTDHHCRYFMRKLSKHALLYTEMVTTGALLHGDRERFLRHDETEHPLA 78
           ++R FS+APM+DWTD H RYF R +S   LLYTEMVTTGA++HG  + +L +++ EHPLA
Sbjct: 10  INRTFSIAPMLDWTDRHYRYFARLMSSELLLYTEMVTTGAIIHGKGD-YLAYNQEEHPLA 68

Query: 79  LQLGGSTAADLAACSRLAQEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPELVADCVKAM 138
           LQLGGS   DLA C++LA E GYDEVNLNVGCPSDRVQN   GACLMA P+LVA CV AM
Sbjct: 69  LQLGGSNPEDLAKCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPDLVAQCVAAM 128

Query: 139 RDAVGIPVTVKHRIGINGRDSYAELCDFVGKVQEAGCESFTVHARIAILEGLSPKENRDI 198
            + V IPVTVK RIGI+ +DSY  L +FV KV  AGC++F +HAR A L+GLSPKENR+I
Sbjct: 129 NEVVDIPVTVKTRIGIDEQDSYEFLTEFVDKVSAAGCDTFIIHARKAWLQGLSPKENREI 188

Query: 199 PPLRYDVVAQLKSDFPGLEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAHVDQ 258
           P L YD V +LK D+P L I +NGG+KTLE+C EHL+  DGVM+GREAY NPYLLA VDQ
Sbjct: 189 PELDYDRVYRLKQDYPQLSISINGGVKTLEECGEHLKQLDGVMVGREAYQNPYLLAQVDQ 248

Query: 259 QLFGSTAPVISRYDALESMRPYIAAHIASGGNMHHVTRHMLGLGLGFPGARRFRQLLSVD 318
           QL G   PV+SR   LE+M PYI  H+ SGG ++H+TRHM GL  G  G+R +R+ LS +
Sbjct: 249 QLCGLDKPVLSRDAVLENMIPYIEKHLVSGGRLNHITRHMTGLYQGEAGSRAWRRYLSEN 308

Query: 319 IHKAENPMLLLDQAAAFLQ 337
            HK    + ++ +A A ++
Sbjct: 309 AHKPGAGIAVVHEARASME 327