Pairwise Alignments

Query, 288 a.a., carbohydrate ABC transporter membrane protein 1, CUT1 family from Pseudomonas syringae pv. syringae B728a

Subject, 328 a.a., ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data) from Sinorhizobium meliloti 1021

 Score =  102 bits (254), Expect = 1e-26
 Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 21/288 (7%)

Query: 9   AWWLVMPVFLLVAFSAIIPMMTVVNYSVQD--IFDQSSRYFVG----TDW---------F 53
           AW  + P FL++A  A  P++  + +S  +  + + S   FVG      W         +
Sbjct: 31  AWLFLAPTFLVLALVAGWPLIRTIYFSFTNASLTNLSGAEFVGFANYLSWITLKSGRTIY 90

Query: 54  RQVLQDPRLHDSLLRQFIYSGCVLLIEIPLGIAIALTMPTKGRWSSLCLIVMTIPLLIPW 113
           R +L DP   +++     ++   + IE  LG+ +AL +  +     L    + IP  IP 
Sbjct: 91  RGLLADPAWWNAVWNTLKFTVLSVSIETALGLIVALVLNAQFPGRGLVRAAILIPWAIPT 150

Query: 114 NVVGTIWQIFGRGDIGLLGYTLNNV--LGINYNYAANASDAWVTVLVIDVWHWTSLVALL 171
            V   +W        G+L   L  +  +G    + A+   A +  L++DVW  T  +ALL
Sbjct: 151 IVSAKMWAWMLNDQFGILNDMLIGLGLIGEKIAWTASPDTAMIAELIVDVWKTTPFMALL 210

Query: 172 CYSGLRAIPDVYYQAARIDRASGWAIFRHIQLPKMKSVLLIAVMLRFMDSFMIYTEPFVL 231
             +GL+ +P   Y+AA+ID      +F  + LP ++  L++AV+ R +D+  I+   +VL
Sbjct: 211 ILAGLQMVPGDIYEAAKIDGVHPVRVFWRVTLPLIRPALMVAVIFRMLDALRIFDLIYVL 270

Query: 232 TGGGPGNSTTFLSQTLTTMALGQFD-LGPAAAFSLVYFLIILLVSWVF 278
           T   P N+ T     +    L  FD     AA S + FLII  ++ ++
Sbjct: 271 T---PNNAQTKTMSVMARENLFDFDKFAYGAAASTMLFLIIATITILY 315