Pairwise Alignments

Query, 1214 a.a., exonuclease SbcC from Pseudomonas syringae pv. syringae B728a

Subject, 1018 a.a., SMC domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  227 bits (578), Expect = 4e-63
 Identities = 311/1233 (25%), Positives = 503/1233 (40%), Gaps = 276/1233 (22%)

Query: 16   GPFE----IDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIP---------RLS 62
            GPF     IDF A  L S  LF I GPTGAGK+T+LDA+C AL+G            R  
Sbjct: 12   GPFADEQIIDFAA--LGSNPLFLINGPTGAGKTTILDAICFALYGKTTGDEREGTQMRCD 69

Query: 63   NIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNATKK 122
               + ++  +  +      R L+RR      A+    G+                     
Sbjct: 70   MADEQRLTQVSFEFELGSTRYLIRRVPEQPRAKKSGEGV--------------------T 109

Query: 123  LQASRQTLTDLD---SEQILSNQSKREFEQLIENRLGLNFEQFTRAVMLAQSEFSAFLKA 179
            LQ S   L+ +D   SE +L      +    IE   GL+ +QF + ++L Q +F   L A
Sbjct: 110  LQKSEAQLSRVDTDGSETLLVAAKVSDATAQIEQLTGLDVDQFRQVMVLPQGKFRELLMA 169

Query: 180  DDKERSELLEKLTNTAIYSQLGRRAYSKSKEAEDALKTLTAQASNIIP----LAPELLAE 235
            D K R ++  +L  T IY ++  R   ++      ++ +  +   I+      + + L E
Sbjct: 170  DSKAREKIFSQLFQTHIYRRIEERLKQQAAGIRRDVEAMRNRRGGILEGAELASDQALIE 229

Query: 236  LEQRLSDAQQQLKAHQTQQRQLEIKQQWLTELHRLRDEQLAAQEALNSAQQAWDEHSGAR 295
             +  ++   +  +AH+ Q       +Q L   ++  D+ L  Q   N  Q    E  G +
Sbjct: 230  EQALIAPELELAQAHKQQ------AEQALLTANQNLDKGLKLQSDFNRLQALQSEGEGLK 283

Query: 296  QTLGQLE-RLGPQRHRFARRVTLNAQLDPLAEQIRQHQRQQTSLHDQQQQLESRRTQAQT 354
                QLE  L  QR + A R      L PL      ++  Q+ L +Q+         A  
Sbjct: 284  AR--QLEATLWQQRLQAAGRAN---SLSPL------YRAMQSRLGEQR--------SASQ 324

Query: 355  SLLEAQQAHSSAKPLLLQAFEAQNTLNHLAQELAKASDLHQQSEQLCIQGKTSLQTLLDQ 414
             L E QQ H+SA+  L Q+ +A   L  L QE                         L Q
Sbjct: 325  HLDECQQIHASAEQALNQSQQAFEQLGALEQE------------------------QLSQ 360

Query: 415  QQQVAQRLERIAGQLQHSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQRAK 474
            QQ++ Q LE +A QL+  ++L                    + RL  G +++ A +   K
Sbjct: 361  QQRLTQ-LEALAPQLEQLNQL--------------------SERLADGQAKMQAAEASGK 399

Query: 475  TADQQLTEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELARLWASQQD 534
             + +QL E   A + +    +        Q+ +  S L D R Q + FE     W  Q  
Sbjct: 400  QSAKQLDELNQARQEIVSRREILKRDAEPQLALQQS-LSDGRAQLKVFER----WQQQ-- 452

Query: 535  VDRQLADLSQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLARSASVEE 594
               ++A L Q+  +A+    +L  +  +  D    A + L ++    +  RLA       
Sbjct: 453  -GLEIAALEQKLTAAKTAGSELAEKHKQAID----AHKRLELSWHRGQAARLA------- 500

Query: 595  LRVQLQDDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDLLTEQRNQLREQV 654
               +L   +PCPVCGS+EH    PE  +       D   A A++                
Sbjct: 501  --AELSPGEPCPVCGSLEH----PEPAMGEFDLPSDEALAQAKQ---------------- 538

Query: 655  GGVIARQKELLRQHEQLTVRHQALAPDLESHPLAAQLLDRDADKRDGWL----SQQLSQL 710
                 R+ + L    Q    ++ L   L +  L+A LL  +  +  G        +L++L
Sbjct: 539  -----RESDALNLLHQARSEYKLLQQSLSNLQLSASLLQEELGEAAGLSFDEHQARLAEL 593

Query: 711  SEVISRDEQRQQALLTLQKDAARLQQQLQAATEASQTAAGHVAEQLKQLEADGQRLEEEL 770
            S+   R +  QQ+L  L+    R + Q +    A   A  H  +  +QL +D  + ++  
Sbjct: 594  SDGFERAKAAQQSLAQLETQLERSEHQGRELQTALDEARAHYGKLAEQLASDKGQYQQ-- 651

Query: 771  TAFTPLVSPQVLEGLRSDASATVLQLEQQVTQRLDQLEQQHEEQQEQTERQQKIEKQQVE 830
                  +S  + +G  SD  AT+      +T+ +D+L+ +   QQ       K E+    
Sbjct: 652  ------ISAAIPQGF-SDV-ATLSTAIADLTKTIDELKAR---QQSVRAAHAKAEQDNAA 700

Query: 831  QQTRLHRQTELAQELTRLGEQQQTS-QQTLAGLLGDHASAEQWQQALEQTIDQARQAESL 889
             +  L   +    E+  L EQ+  S QQ LA    +  S   ++QA    + +A QAE  
Sbjct: 701  AKASLEAASRRLGEVNALAEQESLSFQQALA--TSEFESVAAFEQA---CLTEAEQAE-- 753

Query: 890  AAQALQDIHNQLIQLAAELKSGQQQQQSLQQELAELDVQISEWRAQHPQLDDSALDTLLT 949
                   + NQ+      L + Q     LQ+ LA  +          P +          
Sbjct: 754  -------LSNQIKAFEQALITHQANLSQLQEALAGCEA---------PDM---------- 787

Query: 950  YDDAHVEQLRVQLNSTDKALEQAKVLLQERDQRLQQHQAQHSDLTDSAQLATALQQALEQ 1009
                              ALEQ K+   + +Q +QQ  AQ   ++  A   +  Q+ L+ 
Sbjct: 788  -----------------SALEQQKM---DAEQVMQQALAQWQKVSARAAQLSQTQEQLK- 826

Query: 1010 SALSEQHCADLRAELSEDQRRRNANSELQARIADANSEYLRWARLASLIGSAEGDRFRKI 1069
                     DL+A   E Q                      +A + +L   A G+   KI
Sbjct: 827  -------ALDLKAGALEQQ----------------------YAVVGTLADVANGNTGNKI 857

Query: 1070 A-QAYNLDLLVH----HANAQLRQLVR-RYRLKR------GGSMLGL-LVMDTEMGDELR 1116
            + Q + L +L+      A+ +L+ + + RYRL R      G    GL L ++     ++R
Sbjct: 858  SLQRFVLSVLLDDVLLEASHRLQLMSKGRYRLLRKEERAKGNKASGLELEVEDAYTAKVR 917

Query: 1117 SVHSLSGGETFLVSLALALGLASMA---SSTLRIESLFIDEGFGSLDPESLQLAMDALDG 1173
            SV +LSGGE+F+ +L++ALGL+ +    +  +++++LFIDEGFGSLD +SL+LA+  L  
Sbjct: 918  SVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAIRTLMD 977

Query: 1174 LQAQGRKVGVISHVQEMHERIPVQIKVRRQGNG 1206
            LQ+ GR VGVISHV EM E+I  +I + +   G
Sbjct: 978  LQSAGRMVGVISHVTEMKEQIASRIDILKSAEG 1010