Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 707 a.a., flagellar biosynthesis protein FlhA from Pseudomonas aeruginosa PA14

 Score =  367 bits (943), Expect = e-106
 Identities = 238/696 (34%), Positives = 394/696 (56%), Gaps = 39/696 (5%)

Query: 13  LSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFST 72
           L+ + R  L     ++A++ MM  P+P  L+DVL   NI +S +++++ ++  RPL F+ 
Sbjct: 14  LAGLGRGSLGVPVLLLAMLAMMTLPIPPFLLDVLFTFNIALSIVVLLVCVYALRPLDFAV 73

Query: 73  FPAVLLLTTMFRLALSVSTTRLILLNQDAGH-----IVEAFGQFVVGGNLAVGLVIFLIL 127
           FP +LL+ T+ RLAL+V++TR++LL+   GH     +++AFG+ V+GGN  VG+V+F IL
Sbjct: 74  FPTILLVATLLRLALNVASTRVVLLHGHDGHGAAGKVIQAFGEVVIGGNYVVGVVVFAIL 133

Query: 128 TVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKESQ 187
            ++NF+V+TKG+ R++EV ARFTLDAMPGKQM+ID+DL A LI   EA+KRR+E+ +E+ 
Sbjct: 134 MIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIEQEEAKKRRSEVAQEAD 193

Query: 188 LFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGLIA 247
            +G+MDGA KFV GDAIA L+I+ IN+IGG++IG++QH+M+ GDA ++Y +LTIGDGL+A
Sbjct: 194 FYGSMDGASKFVRGDAIAGLLILFINLIGGVAIGMIQHSMSFGDAGKVYALLTIGDGLVA 253

Query: 248 QIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGM 307
           Q+P+LL+S  + +++TRV ++E     ++G+++  Q+ + PKA  I++  ++   A+PGM
Sbjct: 254 QLPSLLLSTAAAIMVTRVSSSE-----DMGQQVNRQMFASPKALAISAAILIAMGAVPGM 308

Query: 308 PTGVFITIAIICGAGGLL---QLQRAKPKADE--QRTATVAPEMNGKE----DLRTFSPS 358
           P   FI +  + GA       +  +AK  A++  QR   + P    +E         +P 
Sbjct: 309 PHVSFIGLGALAGAAAYWIWHRQNKAKQVAEQEVQRQQELLPAQRAQEVKELGWDDVTPV 368

Query: 359 RQFVLQ----FHPGQDSAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFRF 414
               L+      P  D  Q   L++ I+  R +L  + G  +PS  I    D+ P+ +R 
Sbjct: 369 DMVGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQELGFLMPSVHIRDNLDLLPNAYRL 428

Query: 415 TVYDVPMLKA-TFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAEQSGELNP-- 471
           T+  V + +A  +    +A+   Q+ G      I G       + VW+   Q  +     
Sbjct: 429 TLMGVSVAEAEIYPDRELAINPGQVFGS--LNGIAGKDPAFGLEAVWIEPGQRDQAQSLG 486

Query: 472 ---VSSTTLIIERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEM-QRVLTLTRFS 527
              V ++T++   + + L   A + +G +E + +L  L    P+LA+E+   +++L+   
Sbjct: 487 YTVVDASTVVATHLNQVLHKHAHELLGHEEVQQLLQLLARSSPKLAEELVPGLISLSTLL 546

Query: 528 AVLQRLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAE-GLQ 586
            VLQ L  E VP+R IR IAE +       +D   +   VR+AL   I     G E  L 
Sbjct: 547 KVLQALLQEQVPVRDIRTIAEAIANVAPRSQDPGAMVAAVRVALSRAIVQSIVGLEPELP 606

Query: 587 VWLLTPESEGLLRDGLRQT--QTETFFALSNEISQMLVQQLHIAFPVRAP---EQAVLLV 641
           V  L P  E +L + +++    +E    L   +++ L + L I    R     + A+LLV
Sbjct: 607 VITLEPRLEQILLNSMQKAGQGSEDGMLLEPGMAEKLQRSL-IESAQRQEMLGKPAILLV 665

Query: 642 AQDLRSPLRTLLREEFYHVPVLSFAEISNAAKVKVM 677
           A  +RS +    R     + VL++ EI +  +V ++
Sbjct: 666 AGPIRSMMSRFARMAVPSMHVLAYQEIPDNKQVTIV 701