Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 691 a.a., type III secretion system export apparatus subunit SctV from Dyella japonica UNC79MFTsu3.2

 Score =  425 bits (1092), Expect = e-123
 Identities = 256/670 (38%), Positives = 386/670 (57%), Gaps = 33/670 (4%)

Query: 19  SELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVLL 78
           S+LV    V+AI+ +MI PLP   ID L+A+N+ I   L+++A+++P P+AFS+FP+VLL
Sbjct: 21  SDLVLVAGVVAIIGLMILPLPMVAIDALVALNMLIGVGLLLIAIYIPTPVAFSSFPSVLL 80

Query: 79  LTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITKG 138
           LTT+FRLALS++ TR ILLN D GHI++ FG  VVGGNL VGLV+FLI+TVV F+V+ KG
Sbjct: 81  LTTLFRLALSIAITRSILLNADGGHIIDTFGNMVVGGNLIVGLVVFLIITVVQFIVVAKG 140

Query: 139 SERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKESQLFGAMDGAMKF 198
           +ERVAEV ARF+LDAMPGKQ+SIDSDLR+ L+   EAR+RR  L  ESQL G++DGAMKF
Sbjct: 141 AERVAEVAARFSLDAMPGKQLSIDSDLRSGLLEKDEARRRRRLLEIESQLHGSLDGAMKF 200

Query: 199 VNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGLIAQIPALLISVTS 258
           V GDAIA ++I+ IN++GG+ +GV+ H+M+ GDA+  Y+VLTIGDGL+AQIPALL S+++
Sbjct: 201 VKGDAIAGIVIIVINLLGGLGVGVMMHDMSVGDAVHTYSVLTIGDGLVAQIPALLASISA 260

Query: 259 GMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGMPTGVFITIAII 318
           G+I+TR    E   + N+G  IA QI+ +P+  +I     LG   +PG P  VF+ + +I
Sbjct: 261 GLIVTRTAGDEE--DRNLGAIIARQISGEPRVTMIIGCIALGMMLVPGFPIVVFLPLGVI 318

Query: 319 CGAGGLLQLQ------RAKPKADEQRTATVAPEMNGKEDLRTFSPSRQFVLQFHPGQDSA 372
                  +++      R   K  E +   + P++    D     PS   +L+ H      
Sbjct: 319 LVGIASWRMRERVGFLRRLFKVPESQAELLPPDV---ADSDVLLPSAPLLLEVH----MT 371

Query: 373 QIEALVSEIRKRRNRLVV-----QYGLTLPSFIIEHVDDIAPDEFRFTVYDVPMLKATFT 427
            ++AL S   +   R VV      YG+ LP   +     +    +    Y V +      
Sbjct: 372 ALQALGSNQVRNLLRQVVGGLREDYGVPLPKPALRAGLQLPEQGYALYAYGVRIAHGALR 431

Query: 428 QSHVAVEARQLEGENLPAAIPGNTDRQEDQWV------WLPAE--QSGELNPVSSTTLII 479
              + +  R      LP A    T     + V      W+P +  +  +   + +  ++ 
Sbjct: 432 PGQLFLPGRAA----LPPAPSAETGALAPEGVSGFPGRWIPRDGARQAQAQALDAQQVLH 487

Query: 480 ERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVP 539
           E +  AL+     F+G+QET  +   L  + P+L +EM RV++  R + VL+RL  E VP
Sbjct: 488 EHIRMALERHLSLFVGIQETSNLSNGLSRDYPDLVREMLRVVSPQRVAEVLKRLVEERVP 547

Query: 540 LRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEG-LQVWLLTPESEGLL 598
           +R +R + E + +    E+D  ++ +YVR+AL+  + ++Y      L+V +  PE E  L
Sbjct: 548 IRQLRDVFEAITDAASREKDIVLVAEYVRMALRRHLSYRYADDNHVLRVLVARPELEERL 607

Query: 599 RDGLRQTQTETFFALSNEISQMLVQQLHIAFPVRAPEQAVLLVAQDLRSPLRTLLREEFY 658
           R  +      T  A+  +++  L+ Q+            VLL + D+R  LR L   E+ 
Sbjct: 608 RRSVHTGPAGTQLAVEPDLAARLLAQIGEHARGEHGSAMVLLSSMDVRRHLRKLTEAEYA 667

Query: 659 HVPVLSFAEI 668
            +PVLS+ E+
Sbjct: 668 DIPVLSYQEL 677