Pairwise Alignments

Query, 502 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

Subject, 467 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  232 bits (591), Expect = 2e-65
 Identities = 138/328 (42%), Positives = 199/328 (60%), Gaps = 24/328 (7%)

Query: 193 LLGDSAAIRTLKARAQRVAALDAPLLIQGETGTGKELVARACHASSARHGEPFLALNCAA 252
           + G    ++ +    ++VA  +  +LIQGE+GTGKEL ARA H  S R  +P +++NCAA
Sbjct: 142 MFGQCEPMQRVFTLIRKVAPTETTVLIQGESGTGKELAARALHLLSPRAAKPLISVNCAA 201

Query: 253 LPENLAESELFGYAPGAFTGAQRGGKPGLMELANQGSVFLDEIGEMSPYLQAKLLRFLND 312
           +PE+L ESELFG+  GAFTGA    + GL+E A+ GS+FLDEIGE+    QA+LLR L +
Sbjct: 202 IPESLIESELFGHEKGAFTGAV-SARTGLIEAADGGSLFLDEIGELPAEAQARLLRVLQE 260

Query: 313 GSFRRVGGDREVRVNVRILSATHRDLEKMVSEGTFREDLFYRLNVLNLEVPPLRERGQDI 372
              R+VG  +   VNVR+++ATHR+L+ M   G FREDL+YRLNV+ + +PPLRER  DI
Sbjct: 261 SEIRKVGSTQSRTVNVRMIAATHRNLKAMTRTGEFREDLYYRLNVMQIRIPPLRERQSDI 320

Query: 373 LLLARYFMEQACAQIQRPVCRLAPGTYPALLGNRWPGNVRQLQNVIFRAAAICEHTQV-- 430
           L LAR F+++   ++ +P   L+P    AL  +RWPGNVR+L+N I RA  +C+   +  
Sbjct: 321 LGLARRFLKRQGERMGKPDLNLSPEAMRALERHRWPGNVRELENAIERATILCDGDVITP 380

Query: 431 DIGDLDIAGT---------------AVARQNDSPID-SLENAVEAFERNLLEKLYADYPS 474
            + DLD  G+                  R+ D+  D SLE   + F+  +LE    D  S
Sbjct: 381 SLLDLDSEGSDEYIPETLVDGNNEQTHTREVDASNDLSLE---DYFQHFVLEN--QDRMS 435

Query: 475 TRQLANRLHTSHTAIAHRLRKYGIPGKR 502
             +LA +L  S  ++  R ++ GIP K+
Sbjct: 436 ETELAQKLGISRKSLWERRQRLGIPRKK 463