Pairwise Alignments

Query, 318 a.a., Relaxase from Pseudomonas syringae pv. syringae B728a

Subject, 574 a.a., relaxase from Pseudomonas fluorescens FW300-N2C3

 Score =  346 bits (887), Expect = e-100
 Identities = 169/294 (57%), Positives = 207/294 (70%), Gaps = 7/294 (2%)

Query: 7   RRKASPISS-NAAAGFFKPESPDALLSTSRRRQLIENIWQRTSLPREQFEALYMQAFKSY 65
           RRK SP  + N A G+   ES  +LL+   RRQL++ IWQ T+L   QF  LY+     Y
Sbjct: 9   RRKPSPPPTVNVAEGYLPIESAHSLLAAEHRRQLLDRIWQYTALSHAQFIQLYLNPIHRY 68

Query: 66  AALVQHLPASENHHHAYHGGMLDHGLEIVAYALKIRQMYLLPIGAPPESQAAQSEAWSAA 125
           A  VQ LPASE HHHAY GGMLDHGLE+VA +LK+RQ YLLP G  PE QAAQ++AWSA 
Sbjct: 69  AEQVQQLPASETHHHAYLGGMLDHGLELVACSLKLRQSYLLPTGYAPEDQAAQTDAWSAG 128

Query: 126 SAYGALVHDLGKIAVDVKVELADGTIWHPWHGPLDQPYRFKYVKGRDYRLHGAASSLIYS 185
            AYGAL+HD+GKIAVD+ VE  DG +WHPW G LDQPYRF+Y+KGRDY LH AA+ L+Y+
Sbjct: 129 IAYGALLHDIGKIAVDLLVERQDGRVWHPWQGSLDQPYRFRYIKGRDYHLHSAAAGLLYT 188

Query: 186 HVIPAKALDWLSGFPELWSQLVFAFAFAFAGQYEHADILGEIVSQADQASVAQELGGNPG 245
            ++    LDWLSGFP LW+ L+    +  AGQYE A +LGE+V QAD+ S AQ +GGNP 
Sbjct: 189 QILDRPTLDWLSGFPPLWASLL----YVLAGQYERAGVLGELVMQADRVSTAQNIGGNPS 244

Query: 246 KAMSAPKQSIQRQLAEGLRMLVADKFKLNQPDGPSDGWLTQEGLWLVSKPAVDQ 299
           KA+ AP  S+Q  L  GLR LV  + KLNQP   + GWLT++ LWLVSK   D+
Sbjct: 245 KALQAPTHSLQHHLISGLRYLVQHELKLNQPG--AAGWLTRDALWLVSKTVTDK 296