Pairwise Alignments

Query, 956 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a

Subject, 1337 a.a., cell well associated RhsD protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 112/486 (23%), Positives = 184/486 (37%), Gaps = 100/486 (20%)

Query: 215  FSSKARFNAMGEVLDQTDASG----NRHTSTYDVSGQLKATRLRVMNGSDQVLLHGLMYD 270
            FS     NA+  +  QT A      + +T  YD + +L    L  +  + +V+L   +YD
Sbjct: 705  FSYDFNGNALRHLHRQTGAGNEILSDSYTYEYDHAERL-VKALHRLGDAQEVILIDNVYD 763

Query: 271  AHGRIESQTAGNGVISCASFDLADGRMSELITYRPGVKQLQHLLYDYDPVGNVTRIRDEA 330
              GR+  +T  NG+++ +                          Y Y+    +T I   +
Sbjct: 764  DLGRLSRKTFHNGLLNTS--------------------------YSYNIRSWLTGITGSS 797

Query: 331  --QPARHCSGQRIDAVNEYEYDSLYQLIRASGRETALAGIRPELPELARLP---VDESQL 385
              Q   +  G  I   N     ++  ++  SG +  + G       L RL      E  +
Sbjct: 798  FEQVLHYTDGTGIPYYN----GNISSMVWKSGEDDIMRGYHFTYDNLNRLTNAVYGEGSV 853

Query: 386  LNYNQRY------SYDDAGNLLKLIHKGAQAYTRHMIVDTKSNRALPWSEGDAPPDFDKQ 439
            L  NQ         YD   N+L +   G  + T + ++D                  D  
Sbjct: 854  LVQNQNRFNEQVTGYDKMSNILGIKRSGQTSSTGYGLID------------------DLA 895

Query: 440  FDANGNQQALVAGRALHWDSGNRLIKVDAVTRSEQPEDGEHYAYDASGQRLRKTAKAMTR 499
               NGNQ   V+ RA +   GN     D V +  +      Y YD +G   +   K +  
Sbjct: 896  MSYNGNQLKSVSDRATNSVYGNGFDFKDGVNKEAE------YEYDENGNMTKDLNKKILN 949

Query: 500  T------------FQHQCDVRYL---PGLEIRTNSATGERLEVI-----TVYAGRTNVRC 539
                         F++   + YL    G+++RT    G    V       +Y     V+ 
Sbjct: 950  IQYNCLNLPSRIEFENGHVISYLYDADGIKLRTTHIIGSDTTVTDYCGNVIYENGIPVKL 1009

Query: 540  LHWREGKPDAIDNNQLRYSIGDHLGSSTLELDAQAKLISHEGYYPFGGTAWWAARSAVEA 599
            L   E     + +++  Y + DHLG++ + +D    +     YYPFGG       S+V  
Sbjct: 1010 L--TEAGYVTLADSKYHYFVQDHLGNNRVVVDQSGNVEEVNHYYPFGG----LLSSSVSN 1063

Query: 600  SYKVIRYSGKERD-STGL--YYYGVRYYAPWLMRWMSADPLGD-VEGLNLYRMTRNNPVS 655
            + +  +Y+GKE D   GL  Y YG R Y   L RW + DP+ +     + Y     NP++
Sbjct: 1064 AVQPYKYNGKELDRKNGLDWYDYGARMYDAALGRWHAVDPMSEKYYSWSPYTYCMGNPIN 1123

Query: 656  RVDPEG 661
             +DP+G
Sbjct: 1124 HIDPDG 1129