Pairwise Alignments

Query, 956 a.a., YD repeat protein from Pseudomonas syringae pv. syringae B728a

Subject, 1074 a.a., conserved hypothetical protein, putative cell wall-associated protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 89.0 bits (219), Expect = 2e-21
 Identities = 121/483 (25%), Positives = 186/483 (38%), Gaps = 101/483 (20%)

Query: 217 SKARFNAMGEVLDQTDASGN---RHTSTYDVSGQLKATRLRVMNG--SDQVLLHGLMYDA 271
           S   ++  G VL + D  G        TYD   +L  T+    NG  +D++     +YDA
Sbjct: 447 SHTAYDFTGNVLRKQDNIGTDILETVYTYDDRARL-LTKANTWNGRFTDKITY---VYDA 502

Query: 272 HGRIESQTAGNGVISCASFDLADGRMSELITYRPGVKQLQHLLYDYDPVGNVTRIRDEAQ 331
            GR+  +  G+ V    S+++          +  G++  QH                 +Q
Sbjct: 503 LGRLTGRNYGDKVSESLSYNIRG--------WLTGIES-QHF----------------SQ 537

Query: 332 PARHCSGQRIDAVNEYEYDSLYQLIRASGRETALAGIRPELPELARLP---VDESQLLNY 388
              +  G  +   N     ++  +   SG E  L G +      +RL      E +LL+ 
Sbjct: 538 TLHYVDGVGVPCYN----GNISSMTWHSGSEAGLRGYKFTYDGFSRLKDAVYGEGELLSN 593

Query: 389 NQRY------SYDDAGNLLKLIHKGAQAYTRHMIVDTKSNRALPWSEGDAPPDFDKQFDA 442
           N  +       YD  GN+L L+  G      + ++D   N  L +               
Sbjct: 594 NTNHFTEQVTGYDKNGNILGLLRYGQTNTMSYGLID---NLNLVY--------------- 635

Query: 443 NGNQQALVAGRALHWDSGNRLIKVDAVTRSEQPEDGEHYAYDASGQRLRKTAKAMTRTFQ 502
           NGNQ   V   A     GN +   D  ++  +      Y YDA+G  L K         Q
Sbjct: 636 NGNQLESVNDNATGHVFGNGMEFKDGASKEIE------YEYDANGN-LTKDLNKKIADIQ 688

Query: 503 HQC-------------DVRYL---PGLEIRTNSATGERLEVITVYAGRT----NVRCLHW 542
           + C              + YL    G ++RT   TG    +IT Y G       V     
Sbjct: 689 YNCLNLPEKVQFEGGNSISYLYAADGTKLRTTYKTGNAT-IITDYCGNAIYENGVLIKVL 747

Query: 543 REGKPDAIDNNQLRYSIGDHLGSSTLELDAQAKLISHEGYYPFGGTAWWAARSAVEASYK 602
            E     + NNQ  Y I DH G++ + +     +     YYPFGG       S++  + +
Sbjct: 748 TEDGYITVSNNQFHYFIQDHQGNNRVVVTQNGVVEEVNDYYPFGG----LLSSSLSNNVQ 803

Query: 603 VIRYSGKERD-STGL--YYYGVRYYAPWLMRWMSADPLGD-VEGLNLYRMTRNNPVSRVD 658
             +Y+GKE +   GL  Y YG R Y   L RW + DP G+    L LY   +N+P+ R+D
Sbjct: 804 PYKYNGKELNRDNGLDWYDYGARMYDASLGRWHAVDPSGEKYPALGLYAYCKNSPIIRID 863

Query: 659 PEG 661
           P+G
Sbjct: 864 PDG 866