Pairwise Alignments

Query, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  855 bits (2208), Expect = 0.0
 Identities = 457/636 (71%), Positives = 511/636 (80%), Gaps = 38/636 (5%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEAL  A+EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120
           E LFP G PD+  R+GP+QPRVLVLTPTRELAAQVHESFK+YARDL   S CIFGGVGMN
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+QA+++G+DVLVACPGRLLDLA Q ++DLSHVEILVLDEADRMLDMGF+HDVKKVLA+
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240
           LPAKRQNLLFSATFS DIT LAGKLLHNPERIEVTPPNTTVERIEQR+FR+AA+HKR+LL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300
           AHLIT GAWEQVLVFTRTKHGANRLAEYL+KHGL A AIHGNKSQNARTKALADFKA  V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RI+VATDIAARGLDIDQLPHVVNFELPNV+EDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRD 420
           LK IERMTKQ+I +GDLMGFD +A+EAEKPEVRE       R  RP RG+G     G R+
Sbjct: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVRE------PRQPRPQRGEGKAR--GERN 412

Query: 421 KGKDKGKEKPAAASATGERPAR-QPREKKP-REGTPRSEQRASQPATPRPAADRAPDEFR 478
           K  +KG E+        ER  R Q + +KP R+      Q  ++P  P+   DRAPDEFR
Sbjct: 413 KPAEKGAEQK-------ERNRRSQSKSRKPARDSASGEAQVVARP--PQLPPDRAPDEFR 463

Query: 479 DDEVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAAPAAGGAARPANPGRPAGGARNG-S 537
           DDE+DNFGNR DYVSPYQ K QNRGRRP           G  A+P +  R AG AR G +
Sbjct: 464 DDELDNFGNRVDYVSPYQNK-QNRGRRP-----------GAPAQPGSAPRAAGAARTGAA 511

Query: 538 GSGAPKRNGS-GSSAPRSRDGQPRGRRPAREDQPLPREGQEPAA---RAPRDGQPQPKIV 593
           G+GAP   G     A  +R GQPR  +P R+++   R   EP      A +  + QP I+
Sbjct: 512 GAGAPAAKGKRPGQAQGARSGQPRNGQPRRKNE--SRRIDEPVVSRQEAAKPREKQPVII 569

Query: 594 HKESKIDRFPSAEQLDQLPSRPRGEKPALLTRNRDS 629
           HKESKIDR PS +QL+QLP+RPRGEKPALLTRNR++
Sbjct: 570 HKESKIDRLPSLDQLEQLPTRPRGEKPALLTRNREA 605