Pairwise Alignments

Query, 460 a.a., Multi antimicrobial extrusion protein MatE from Pseudomonas syringae pv. syringae B728a

Subject, 456 a.a., MATE efflux family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  237 bits (605), Expect = 5e-67
 Identities = 159/447 (35%), Positives = 236/447 (52%), Gaps = 11/447 (2%)

Query: 12  ILRLAGPLIASQMAHMLMVFTDTVMMGKIGPEALAGGGLGAATYSFVSFFC-VGVMAAVG 70
           IL+L  PLI S MA + +  TDTVM+G    EALA   LG+++  F       G   AV 
Sbjct: 14  ILKLGLPLIGSHMAQIAISATDTVMLGWYSAEALAAVVLGSSSIFFALLIVGSGFAWAVM 73

Query: 71  TLVSIRHGAGDTEGATRLTQAGLWLAWGMA-LVAALLLWNLEPILLQFGQAEANVHMAAQ 129
            +V+     GD     R+T+ G WL    A +V   +LW+  P L+  GQ      +  +
Sbjct: 74  PMVAKAASEGDEVQIRRVTRMGFWLVLIFAAVVTPPMLWSA-PWLVALGQDPGTAQLTQE 132

Query: 130 FLITLPFAL-PGLLSFMALRGFTSALGRAGPVMTISLAGAAANFVLNYALIHQWLGLPNL 188
           +L     AL PGLL  M L+G+ SAL R   V+ +++  A  N  LNY LI   LG+P L
Sbjct: 133 YLRIAGLALGPGLL-VMVLKGYLSALERTQVVLWVTIGAAVLNAGLNYVLIFGRLGMPEL 191

Query: 189 GLMGIGLVTAIVTNCMALALALHIRLHPAYAAYPIRKGLSKLSRSHLGELWRLGLPIGGT 248
           G+ G  L +  +     +AL ++ R       + + + L     S    ++RLG PI  T
Sbjct: 192 GIRGAALASLSLHLVSLVALVIYARRK--LPEHDLFRRLWVPDWSAFRAVYRLGWPISVT 249

Query: 249 YAVEVGLFTFAAFCMGAMGSTQMAAHQIALQTVSMAFMVPVGMSYAVTMRIGQHYGAGNL 308
              E G+F  +A  MGA+G+  +AAH IALQ V++ FMV VG+S A T+R G+  G G+ 
Sbjct: 250 SFAESGMFAASAMMMGAIGTLHLAAHGIALQMVAITFMVHVGLSQAATVRAGRALGLGDA 309

Query: 309 LMVRMAGRLGIGFGGCVMLMFGLLFWLAPHLVIGLFLDINDPAFAEIVVLATKLLAIAAL 368
             ++  G + I       L   ++F   P ++IG FL  ++PA AEI+ +   LL +AAL
Sbjct: 310 AALKRGGAVAIALSAGFSLCTVVVFVTMPEVLIGAFLSPDEPARAEILGIGIALLFMAAL 369

Query: 369 FEFFDGTQTIAMGAIRGLKDARTTFLIGLGCYWLIAAPAAWLLGFSTDAGASGVWWGLAL 428
           F+F DG Q +A+G +RG++D R   +I    YW +  P  ++LGF T     G+W GL +
Sbjct: 370 FQFADGAQIMALGLLRGVQDTRVPMVIAALAYWGVGLPVGFVLGFYTPLAGVGIWAGLVV 429

Query: 429 GLFCSAVALTYAF----EWKTARLLRQ 451
           GL  +A+ L + F     W+   L+R+
Sbjct: 430 GLALAAMLLMWRFWGRRGWQARGLVRE 456



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 19/145 (13%)

Query: 231 SRSHLGELWRLGLPIGGTYAVEVGLFTFAAFCMGAMGSTQMAAHQIALQTVSMAFM-VPV 289
           S  H   + +LGLP+ G++  ++ +       +G   +  +AA  +   ++  A + V  
Sbjct: 7   SFGHARAILKLGLPLIGSHMAQIAISATDTVMLGWYSAEALAAVVLGSSSIFFALLIVGS 66

Query: 290 GMSYAVTMRIGQHYGAGNLLMVRMAGRLGIGFGGCVMLMFGL-----LFWLAPHLV-IGL 343
           G ++AV   + +    G+ + +R   R+G      ++L+F       + W AP LV +G 
Sbjct: 67  GFAWAVMPMVAKAASEGDEVQIRRVTRMGF----WLVLIFAAVVTPPMLWSAPWLVALG- 121

Query: 344 FLDINDPAFAEIVVLATKLLAIAAL 368
                DP  A+   L  + L IA L
Sbjct: 122 ----QDPGTAQ---LTQEYLRIAGL 139