Pairwise Alignments

Query, 458 a.a., transcription termination factor NusA from Synechocystis sp000284455 PCC 6803

Subject, 493 a.a., Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication from Pseudomonas syringae pv. syringae B728a

 Score =  192 bits (489), Expect = 2e-53
 Identities = 129/421 (30%), Positives = 221/421 (52%), Gaps = 39/421 (9%)

Query: 12  MISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEGF 71
           ++  +S    +P + + EAL  AL    ++         +F +E      VE++ +   +
Sbjct: 8   VVESVSNEKGVPASVIFEALELALATATKK---------RFEDEV--ELRVEINRQTGNY 56

Query: 72  RVLSTKRIVEEVENSDQQISLKEVLEVAEEAQLGDEVVLDVTPEQKD---FGRMAAIQTK 128
                  +VE+ +  D    L   ++ A+  + G  V  D+  E+ D   FGR+AA   K
Sbjct: 57  ETFRRWTVVEDEDLDDPAYEL--AVDQAQAKKPG-AVAGDLIEEKIDSIEFGRIAAQTAK 113

Query: 129 QVLLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKRE 188
           QV++QK+R+ +R  + + +++  G +++    +  R ++IV + ++      EA L + +
Sbjct: 114 QVIVQKVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNN-----AEALLARED 168

Query: 189 QLPNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVA 248
            +  + +R     R  LK +R    RGPQL++SR A  ++++LF +EVPEI E ++ ++A
Sbjct: 169 IISRETFRVGVRVRALLKEIRT-ENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMA 227

Query: 249 VAREAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSP 308
            +R+        G R KIAV + ++ +DP GACIG RGSR+ AV  EL GE++D++ W  
Sbjct: 228 ASRDP-------GSRAKIAVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDD 280

Query: 309 DPATYIAQALSPARVDQVYLIHAEERHAL-VIVAEDQLSLAIGKEGQNVRLAARLTGWKI 367
           +PA ++  A+SPA V    +I  E+ HA+ + V  D L+ AIG+ GQNVRLA++LTGW +
Sbjct: 281 NPAQFVINAMSPAEV--AAIIVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTL 338

Query: 368 DIKDPETYARDKEAIEQSILERAAASAQARAEREAAEQEAQAKLEAEMAALEAEEAEELE 427
           ++         ++A    IL           E E  E+ AQ  ++    +LE      LE
Sbjct: 339 NVMTESDIQAKQQAETGDILRNFI------EELEVDEELAQVLVDEGFTSLEEIAYVPLE 392

Query: 428 E 428
           E
Sbjct: 393 E 393