Pairwise Alignments

Query, 465 a.a., glycogen synthase from Synechococcus elongatus PCC 7942

Subject, 549 a.a., starch synthase (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (370), Expect = 1e-39
 Identities = 147/479 (30%), Positives = 214/479 (44%), Gaps = 96/479 (20%)

Query: 2   RILFVAAECAPF--AKVGGMGDVVGSLPKVLKALGHDVRIFMPYYGFLNSKLDIPAEPIW 59
           R+L VAAE      AKVGGM DV+  LP  L  LG    + MP YGFL+ +    AEP+ 
Sbjct: 12  RVLMVAAENGALKGAKVGGMADVIRDLPGALYPLGVCSDVIMPSYGFLHRQQG--AEPLG 69

Query: 60  W----GYAMFNHFAVYETQLPG-SDVPLYLMGHPAFDP-HRIYS--------GEDEDWRF 105
                 Y   +   +Y    P   +V L+L+ HP FD   +IY+         ED + +F
Sbjct: 70  ELVVDFYGQPHWLTLYRASHPSLPEVNLFLLDHPLFDQGGKIYTPGASDRPFAEDAN-KF 128

Query: 106 TFFANGAAE--FSWNYWKPQVIHCHDWHTGMIPVWMHQSPD------ISTVFTIHNLAYQ 157
             F  G A+   S    +P  +H HDWH G++ +    +P+      I  V +IHNLA Q
Sbjct: 129 ALFCLGVAKAVLSGLMSRPDHLHLHDWHCGVLALLRAFAPEYAALQAIPCVLSIHNLAIQ 188

Query: 158 GPWRWKLEKITWCPW--------------------YMQGDSTMAAALLYADRVNTVSPTY 197
           G      E  +   W                    Y Q  + + AA++ +DRV+ VSP+Y
Sbjct: 189 GARPLTQEHSSLQAWLPSLFASLERDALNQVIDPRYPQCFNPLRAAIVLSDRVHLVSPSY 248

Query: 198 AQQIQTPTYGEK----LEGLLSFI-----SGKLSGILNGID------------------- 229
           AQ++  P+  +K     EGL + +     +G L GILNG +                   
Sbjct: 249 AQEVLRPSSPDKGFIGGEGLEADLQQKQQAGALHGILNGCEYPSKLKRSGQLSKRQALLR 308

Query: 230 --VDSYNPATDT--RIVANYDRDTLDKRLNNKLALQKEMGLEVNPD-----RFLIGFVAR 280
              D   P  D+  + +  +   T   R  ++LAL     L    +     R L+  V R
Sbjct: 309 GNTDKLLPLIDSAEQAIQGWLCQTPWVRSVDQLALMSLARLRRQSEFQDAPRLLLTSVGR 368

Query: 281 LVEQK----------GIDLLLQILDRFLSYS-DAQFVVLGTGERYYETQLWELATRYPGR 329
           L +QK          GI  L  +L     ++ +    +LG+G++  E QL +LA RY   
Sbjct: 369 LTDQKMAILCYRDQQGISTLEYLLKLLAEHAPNGLMAILGSGDQAIEAQLAQLAGRYQNL 428

Query: 330 MSTYLMYDEGLSRRIYAGSDAFLVPSRFEPCGITQMLALRYGSVPIVRRTGGLVDTVFH 388
           +     +D  LS  +Y   + F++PS FEPCGI+QMLA+R     +V   GGL DTV H
Sbjct: 429 LFIN-GFDLPLSDTLYECGNLFIMPSSFEPCGISQMLAMRAAQPCLVHGVGGLKDTVSH 486