Pairwise Alignments

Query, 716 a.a., polynucleotide phosphorylase/polyadenylase from Synechococcus elongatus PCC 7942

Subject, 700 a.a., polynucleotide phosphorylase/polyadenylase (RefSeq) from Shewanella loihica PV-4

 Score =  637 bits (1643), Expect = 0.0
 Identities = 347/710 (48%), Positives = 475/710 (66%), Gaps = 12/710 (1%)

Query: 1   MPQLSKSLSFDGRDIRLELGLFAPQAGGSVLISSGDTAVLVAATRSTARE-GIDFLPLTV 59
           M  + KS  +    + LE G+ A QA  +VL S GDT VLV      A E G DF PLTV
Sbjct: 1   MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV 60

Query: 60  DYEERMYAAGRIPGGFLRREGRPPERATLTSRLIDRPLRPLFPSWLRDDLQVVATTLSMD 119
           +Y+E+ YAAG+IPGGF +REGRP E  TLT+RLIDRP+RPLFP+  ++++QV+ T +S+D
Sbjct: 61  NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD 120

Query: 120 ETVPPDVLAVTGASIATLVAKIPFYGPMAAVRVGLVGDDFIINPTYREIEKGDLDLVVAG 179
             + P+V+++ G S A  ++ IPF GP+ + RVG V  ++I+NPT  ++E   L+L VAG
Sbjct: 121 PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG 180

Query: 180 TPAGVIMVEAGANQLPEADVIEAIDFGYEAVQELIKAQQSLLAELGIEQILPEAPNADNT 239
           T   V+MVE+ A+ LPE  ++ A+ +G+E  Q +I+A + L AE+        AP  +  
Sbjct: 181 TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE 240

Query: 240 LENFVRDRASSGVQQVLQHFSFTKSERDAALDEVKASVVEAIAALPEEDPVRSVTAAEPK 299
           L   V+D A +G+ +  Q     K +R A +D VK +  EA+ A   E+P      A+ +
Sbjct: 241 LVAKVKDLAEAGLTEAYQ--IVVKQDRYAQVDVVKTAAKEALLA---ENP-----DADAR 290

Query: 300 ALGNTFKALTKTLMRQQILRDGVRVDGRKLDQVRPISSQVGLLPPRVHGSGLFQRGLTQV 359
            +     +L K ++R +I+    R+DGR+ D VR +S   G+LP R HGS LF RG TQ 
Sbjct: 291 EIDGLLGSLEKKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLP-RTHGSALFTRGETQA 349

Query: 360 LSIATLGTPGDAQELDDLHPDTQKRYLHHYNMPPYSVGETRPMRSPGRREIGHGALAERA 419
           L   TLGT  DAQ++D +  +   R++ HYN PPYSVGET  + SP RREIGHG LA R 
Sbjct: 350 LVTCTLGTERDAQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRG 409

Query: 420 LLPVLPSKEEFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIR 479
           +  V+P+ EEFPY IRVVSE+  SNGS+SM SVCG++LALMDAGVPIK  V+G AMGL++
Sbjct: 410 IHAVMPTAEEFPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVK 469

Query: 480 EGDEYRVLTDIQGIEDFLGDMDFKVAGTDQGITALQMDMKIHGLPLEIIADAINQAKPAR 539
           EGD++ VL+DI G ED LGDMDFKVAGT  G+TALQMD+KI G+  EI+  A+ QA  AR
Sbjct: 470 EGDDFVVLSDILGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGAR 529

Query: 540 LHILNKMLEAIATPRADLSTYAPRLFRIQINPEQIGLVIGPGGKTIRSITEQTGAKIDIE 599
           +HILN M +AI+  RA++S +APR+  ++INPE+I  VIG GG TIR++TE+TG  I++E
Sbjct: 530 VHILNVMDQAISGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELE 589

Query: 600 DTGAVTISAVDADSALRAKSIIEGMTRTITAGDVYIGKVTRIIPIGAFVEFLPGKEGMIH 659
           D G V I++ + D+   A   I+ +T  +  G VY GKV RI+  GAFV  LPGK+G++H
Sbjct: 590 DDGTVKIASANGDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVH 649

Query: 660 ISQIADYRVARVEDELTVGDEVVVKVREIDQKGRVNLTRKGIDPEEVSAA 709
           ISQIA+ RVA V D L VG EV VKV E+D++GRV L+ K   P+E +A+
Sbjct: 650 ISQIAEERVANVSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAAS 699