Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (312), Expect = 3e-33
 Identities = 89/351 (25%), Positives = 163/351 (46%), Gaps = 23/351 (6%)

Query: 21  VLMGVASCQGRQPAAFQGPPALPVDVTKATVETVNDLTEYLGALEATEQTILRPQIQGRI 80
           +LM  A    ++P     PPA+ V       + ++     +G L+A +   +  ++ G++
Sbjct: 14  LLMNSAVLSAKEP---NQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKV 70

Query: 81  VSVAVQPGQIVSVGQPMFVLDSEQVEADVAAANAEVARQEAQLRDAKITFERQKFLADQG 140
             +AVQ  Q V  GQ +  LD ++ +A +  A A +  ++ +L       E ++ L    
Sbjct: 71  DMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLT------EYERLLKRNA 124

Query: 141 VVPLQNLDNARRELQTAQAQLKAAQQNAVAKSVNVQYKTVRAPINGLVGDIRLKIGDFVD 200
           + P + +D  R  ++  QA+L AAQ N     +        AP +G VG I    G +V 
Sbjct: 125 ITPTE-IDAQRARVEIGQARLNAAQANLADLHIT-------APFDGTVGFIDFSRGKWVS 176

Query: 201 TGAELTTITRNNQLFINIPVPTVRIPQLRKGQPVKLLDPFSKNILATGAVDFVSPVVQQN 260
            G+EL T+   + + +++ +P   +PQL KG  V+       N+   G+V  V   + Q 
Sbjct: 177 AGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQE 236

Query: 261 LQTVLVKVVVPNADGLIRNGQIVQSEIVWDRKEAVLVPTQAVTPLAGANFVYVVEPKPNS 320
              + V+V  PN D  ++ G ++ + I +    A ++P QA+       FVYV+      
Sbjct: 237 TLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVI------ 290

Query: 321 PDQFQVRQQKVELGSIFNNRYQIRSGLKPGETVATTNLLSLTDKATVKPQT 371
            +    ++++V LG+   N+  I  GL+ GE +    ++++ D A V   T
Sbjct: 291 GEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVT 341