Pairwise Alignments

Query, 376 a.a., Secretion protein HlyD from Synechococcus elongatus PCC 7942

Subject, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  126 bits (317), Expect = 9e-34
 Identities = 82/334 (24%), Positives = 156/334 (46%), Gaps = 20/334 (5%)

Query: 53  TVNDLTEYLGALEATEQTILRPQIQGRIVSVAVQPGQIVSVGQPMFVLDSEQVEADVAAA 112
           T N +  Y   ++  +   +RPQ+ G I  + V  G  V  GQ +F++D  Q EA V  A
Sbjct: 40  TANLMKAYPATIKGRQDVEIRPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTA 99

Query: 113 NAEVARQEAQLRDAKITFERQKFLADQGVVPLQNLDNARRELQTAQAQLKAAQQNAVAKS 172
            A VA  EA +   ++T + +  L  + ++   +L  A+  L  AQAQL  A+       
Sbjct: 100 KASVATAEAAVNTQQMTVDNKIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQ 159

Query: 173 VNVQYKTVRAPINGLVGDIRLKIGDFV--DTGAELTTITRNNQLFINIPVPTVRI----- 225
            N  +  V++P +G++ DI  ++G  V       +TT++  +++++        +     
Sbjct: 160 QNYSFTQVKSPSDGVINDIPYRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTK 219

Query: 226 ------PQLRKGQPVKLLDPFSKNILATGAVDFVSPVVQQNLQTVLVKVVVPNADGLIRN 279
                  ++ K   +KL         A G VD ++ V+ Q+  +V ++ + PN + ++R+
Sbjct: 220 TGGTIKEEISKIPAIKLQLIDGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRS 279

Query: 280 GQIVQSEIVWDRKEAVLVPTQAVTPLAGANFVYVVEPKPNSPDQFQVRQQKVELGSIFNN 339
           G      I ++ +  + +P  A   +    FVYV++P         V+  ++ + ++ N 
Sbjct: 280 GGTANVLIPYNMENVISIPQSATVEIQDKKFVYVLQPDNT------VKYTEIGIFNLDNG 333

Query: 340 R-YQIRSGLKPGETVATTNLLSLTDKATVKPQTP 372
           + Y + SGL PG+ +    + SL D   ++P TP
Sbjct: 334 KEYLVTSGLNPGDKIVIEGVQSLKDGQKIQPITP 367