Pairwise Alignments

Query, 449 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase from Synechococcus elongatus PCC 7942

Subject, 507 a.a., penicillin-binding protein 4 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (321), Expect = 5e-34
 Identities = 122/401 (30%), Positives = 175/401 (43%), Gaps = 21/401 (5%)

Query: 37  RSLFRYRAAEALIPASNQKLLTTIAALNRLGPDARLQTRLWLQPSRQTLIVEGA------ 90
           + L+  +A    IPAS QK+LT + AL  LGP+    T LW     +   VEG+      
Sbjct: 67  KQLYSQQADTLFIPASTQKVLTAVTALAALGPEFSYVTDLWSDAPIRQGHVEGSVYLRFS 126

Query: 91  GDPSFDRAGINALAATVPSDRYNQLIG----LDDPASSYWPAAWSGLDRLQGYGAPLNRL 146
           GDP+     + AL A +      ++ G    + D         W   D    + AP++  
Sbjct: 127 GDPTLTHEDLKALFAQLQKLGIKRIEGHLYLVGDKQEQLQAPGWVWDDLGICFAAPVSSY 186

Query: 147 IFLENAHQLTLQPRSLGQPLGVLWEDPLDRQRWQVRNRSRTVSSQAA--EFINLDRDPQR 204
           I  +N       P S  Q   V     L    + V   S  + S  A  +F  LD     
Sbjct: 187 IINQNCVYGQFVPSSAKQTSRVT----LSANSYGVNVSSDAIFSPQANHDFCQLDLVRLS 242

Query: 205 PILTVAGQLRAGSESEAVAIAATQPGQRFLEALQIRLGTAGSSISTVSLQTNWPSGDRIL 264
                      GSE+  +AIA + P +  ++ L   L    S    V +  + P   + L
Sbjct: 243 QNQYHLRGCYPGSEAIPLAIAISDPQKFAIDTLTATLKGKISLSGKVKIGHDIPDKAK-L 301

Query: 265 LTTVESPPLRELIRTTNEDSQNLYAEALLRWIGRSGQPDPVRDRRAADQAELGRALQAIG 324
           + +  S PL EL++T    S NL A++L + +G+            A  A +   L  +G
Sbjct: 302 IASHRSAPLPELLKTMLLKSDNLIADSLFKRVGQDYYKTQGSFTYGA--AAMRHILTELG 359

Query: 325 ISTTGLVVDDGSGLSRRNRVSAQTLLEALLWQVQQPTNQALRDSLPIAGSSGTLRRR--F 382
           I  T   + DGSGLSR N +SA+ L + L    Q     +L DSLP AG SGTL+ R  +
Sbjct: 360 IDLTNANIVDGSGLSRYNLLSAKQLADVLTLMYQDARFHSLIDSLPEAGVSGTLKYRQGY 419

Query: 383 ANSPLRGRVQAKTGFLTGAAGLSGFIDLPNYGPIAFSILAN 423
              PL+ RV AKTG + G A L+GFI +P    I F +L N
Sbjct: 420 TQPPLKNRVFAKTGSMQGVANLAGFIRIPQQRDILFVVLEN 460