Pairwise Alignments

Query, 449 a.a., D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase from Synechococcus elongatus PCC 7942

Subject, 468 a.a., penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  116 bits (291), Expect = 1e-30
 Identities = 114/410 (27%), Positives = 186/410 (45%), Gaps = 26/410 (6%)

Query: 29  IAIADLDGR-SLFRYRAAEALIPASNQKLLTTIAALNRLGPDARLQTRLWLQ------PS 81
           I++ DL  + SL+ YR  +   PAS  KLLT I AL+R   D   +T +W          
Sbjct: 44  ISVYDLTAKKSLYTYRDTKLSRPASTMKLLTAITALSRPDADNPFRTEVWHDGVIEHDTL 103

Query: 82  RQTLIVEGAGDPSFDRAGINALAATVPSDRYNQLIG-----LDDPASSYWPAAWSGLDRL 136
           +  L V G  DP FD   +++L   V +  ++ + G     +    S YW   W+  D  
Sbjct: 104 QGNLYVVGGFDPEFDSLMMDSLIEEVITFPFSVINGQVYGDVSMKDSLYWGHGWAWDDTP 163

Query: 137 QGYGAPLNRLIFLENAHQLTLQPRSLGQPLGVLWEDPLDRQRWQVRNRSRTVSSQAAEFI 196
           + Y   ++ L+F + A ++T+ P SL      +   P+    + + NR++T +  A ++ 
Sbjct: 164 EAYQPYMSPLMFCKGAVEVTVVPGSLQGDTASVSCKPVSSY-YTLTNRTKTRTPSAGKY- 221

Query: 197 NLDRD--PQRPILTVAGQLRAGSESEAVAIAATQPGQRFLEALQIRLGTAGSSISTVSLQ 254
           +L RD       L V G +    +     I     G  F+ A   RL   G  +      
Sbjct: 222 SLSRDWLTNGNNLIVTGNVPTFRKD---LINVYDSGSFFMHAFLERLRAKGIVVPESYGF 278

Query: 255 TNWPSGDRILLTTVESPPLRELIRTTNEDSQNLYAEALLRWIGRSGQPDPVRDRRAADQA 314
           T  PS     +   E+P +++++    ++S NL AEA+L  I         + R  A+  
Sbjct: 279 TELPSDGAEQMARWETP-VQKVLNQLMKESDNLNAEAMLCRIASQATG---KKRVTAEDG 334

Query: 315 --ELGRALQAIGISTTGLVVDDGSGLSRRNRVSAQTLLEALLWQVQQP-TNQALRDSLPI 371
             E+ + ++ +G       + DG GLS  N +S   L++ L +   Q    Q L  SLP+
Sbjct: 335 IVEIMKLVRNLGHDPKDYKIADGCGLSNYNYLSPALLVDFLKYAYSQSDVFQKLYKSLPV 394

Query: 372 AGSSGTLRRRFANSPLRGRVQAKTGFLTGAAGLSGFIDLPNYGPIAFSIL 421
           AG  GTL+ R  N+P    V AKTG  T    L+G++ + N   +AF+I+
Sbjct: 395 AGIDGTLKNRMKNTPAFRNVHAKTGSFTAINALAGYLKMKNGHTLAFAIM 444