Pairwise Alignments

Query, 280 a.a., diaminopimelate epimerase from Synechococcus elongatus PCC 7942

Subject, 279 a.a., diaminopimelate epimerase (RefSeq) from Shewanella loihica PV-4

 Score =  213 bits (542), Expect = 4e-60
 Identities = 115/278 (41%), Positives = 165/278 (59%), Gaps = 4/278 (1%)

Query: 3   LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPG-SGDSDYV 61
           + F K HGLGNDF++VD   +     +PEQ  ++ DRNFG+G D ++   P    D D+ 
Sbjct: 2   IHFTKMHGLGNDFMVVDG-VTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFH 60

Query: 62  MRIFNSDGSEPEMCGNGIRCLAKFLSELDGGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121
            RIFN+DGSE E CGNG RC A+F+       + + +++T +G +   L   G VTV+MG
Sbjct: 61  YRIFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMG 120

Query: 122 PAYLKPVEIP-TTLTGTGDRVVEADLEVGDRPWKVTTVSMGNPHCITFVEDVAAVPLAEI 180
              L+P  IP          +++AD+  G + +    VSMGNPHC+  V+DVA   +  I
Sbjct: 121 IPVLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVDDVANADVERI 180

Query: 181 GPLFEHHPVFPQRTNTEFVEVVRPDYLKMRVWERGAGATLACGTGACATLVAAVLTGRSD 240
           G L   H  FP+  N  F++VV  +++K+RV+ERGA  TLACG+GACA +    L G+  
Sbjct: 181 GSLLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKLA 240

Query: 241 RQATVELPGGPLQIEWREDGH-LFMTGPAVKVFSGSME 277
           R+  V+LPGG L I W  +G  L+MTGPA  V+ G ++
Sbjct: 241 RRVRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQIQ 278