Pairwise Alignments

Query, 600 a.a., ATPase from Synechococcus elongatus PCC 7942

Subject, 585 a.a., lipid A ABC transporter ATP-binding protein/permease MsbA from Pantoea sp. MT58

 Score =  197 bits (502), Expect = 8e-55
 Identities = 145/480 (30%), Positives = 239/480 (49%), Gaps = 11/480 (2%)

Query: 115 VFRGILYQPYPFHVRHNSSSLIAEITHDVNGVVSSVIQPLLQLNASVVVIAALLTGLLLL 174
           +F  ++  P  F  + ++ +L++ I++D   V SS    L+ +      I  L   +   
Sbjct: 103 LFSHMMGMPVAFFDQQSTGTLLSRISYDCEQVASSSSGSLVTVVREGASILGLFVMMFYY 162

Query: 175 TPELTIAAALILGSTYSAVYWLNRQRLLRFSRLKSENSRLVLKILQESLGGIRDVLLDGS 234
           + +L++   L+L    S    +  +R    S+        V    ++ L G ++VL+ G 
Sbjct: 163 SWQLSLIL-LVLAPIVSLAIRIVSRRFRGISKNMQNTMGQVTSHAEQMLKGHKEVLMFGG 221

Query: 235 QGLFEDLYRRFDYNYRRSQEARMLIAESPRFVITGIAIVSIALMAQILASQERGFAEALP 294
           Q +    + +   N RR Q  +M+ A S    I  I +++ + +A +L +       A  
Sbjct: 222 QQVETTRFEQVSNNMRR-QGMKMVSATSLSDPI--IQLLASSALAFVLYAASFPSVMATL 278

Query: 295 ILGGFAL---GSYRLLSPLQQGFAAIATIRSDAMALSAVLTALDRPLQSSSTAIAPRPLT 351
             G  +        L+ PL+      A  +    A   +   LD   +           T
Sbjct: 279 TAGSISAVFSAMLMLMRPLKSLTNVNAQFQRGMAACQTLFAILDTEQEKDEGTYVVERAT 338

Query: 352 LERSLQFESVRFRYGETGPWILDQLDLTIPACSTVAFVGSTGSGKSTTADLILGLLQPVE 411
              +++F  V F Y  +    L+ ++LTIPA  TVA VG +GSGKST A L+        
Sbjct: 339 --GNIEFRDVTFTYPGSETPALEHINLTIPAGKTVALVGRSGSGKSTLASLLTRFYDIDS 396

Query: 412 GTIWIDDRPLQSPETIRAWQQAIAHVPQSIFLADGTIAENIAFGIPPKRIDRDRVRQAAE 471
           G I +D   L+   T+ + ++ +A V Q + L + T+A NIA+        R+ + +AA+
Sbjct: 397 GEILLDGHALRD-YTLASLREQVALVSQHVHLFNDTVANNIAYARTDV-FSREAIEKAAQ 454

Query: 472 WAQIAEFIEALPRGYDEAIGERGVRLSGGQRQRIGIARALYRRASVLVLDEATSALDNAT 531
            A   EFI  +  G D  IGE GV LSGGQRQRI IARAL R + +L+LDEATSALD  +
Sbjct: 455 MAHAMEFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 514

Query: 532 ESAVMAALQELSRNLTVILIAHRLSTVERCDRIFEFSQGKVIASGTYAELLERSTSFQRL 591
           E A+ +AL+ L +N T ++IAHRLST+E+ D I    +G+++  G++ +LL+++ ++ RL
Sbjct: 515 ERAIQSALETLQQNRTTLIIAHRLSTIEKADEILLVEEGRIVERGSHQQLLQKNGAYTRL 574