Pairwise Alignments

Query, 336 a.a., conserved hypothetical protein YCF62 from Synechococcus elongatus PCC 7942

Subject, 474 a.a., tRNA(Ile)-lysidine synthetase (RefSeq) from Shewanella loihica PV-4

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 93/312 (29%), Positives = 142/312 (45%), Gaps = 25/312 (8%)

Query: 12  LSSDCWTPFHARLHQLLQR-----------RSLLPTRSRLLLAVSGGQDSLALVQ-LLRG 59
           ++ D + PF A L QLL R           R       +L+LA SGG DS  L   L   
Sbjct: 1   MAPDSFCPFDA-LTQLLARVKPAAGINSGSRPATKPAMKLVLAYSGGVDSEVLAHGLSLF 59

Query: 60  LQPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQLPFYCQR----SPEPPRSEAAAR 115
            + H  ++  + H  HG  +++ +   H  + A ++ LP   +R    S      EAAAR
Sbjct: 60  AKQHPEFNYLLVHVHHGLSANADSWQSHCERRAREYGLPISVKRVTVASGARISLEAAAR 119

Query: 116 TWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTRGSHLQGLASLRWQRSLSDRLTL 175
             RY  L +  A  D  +L+T H   D+ ETLL  L RG   +GLA++   ++ +    L
Sbjct: 120 EARYDALRSELAPGD--ILLTAHHQDDQLETLLLALKRGLGPKGLAAMGEVQAFTPDNPL 177

Query: 176 VRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFARNRLRLEVLPQLRQINPQCDRHLAN 235
           +RP L  +RA+         L   ED +N+D RF RN LR EVLP L    P      + 
Sbjct: 178 LRPLLTSSRAQIEAFAMAEGLSHIEDESNKDSRFDRNFLRNEVLPILTARWPAFAATASR 237

Query: 236 TAELLADEADWLAE-----LTEQVYQQSLSEKG-LCRSQLAQQPIALQRRVLHAFLQDQL 289
           +A+L A++   + E     L   +     S+   L    LA+QP   +  +L  F++ + 
Sbjct: 238 SAQLCAEQQALIDEEVSLCLPAMLLSVPHSQAAVLDLKALAEQPGRWRPHLLRGFIEHRG 297

Query: 290 QRSPSTVQVEEL 301
              PS  Q+ ++
Sbjct: 298 FPLPSAAQLGDI 309