Pairwise Alignments

Query, 469 a.a., DEAD/DEAH box helicase-like from Synechococcus elongatus PCC 7942

Subject, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

 Score =  112 bits (280), Expect = 3e-29
 Identities = 122/480 (25%), Positives = 206/480 (42%), Gaps = 91/480 (18%)

Query: 6   LRDYQQQVVEELRHSYATGHRSPLVAMPTGAGKTAVFSYISLQSAAKQKRTLILVHRKEL 65
           LRDYQQQ V+     +     S ++ +PTGAGK+ V + ++      + R L+L H KEL
Sbjct: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELA---RIARGRVLVLTHVKEL 67

Query: 66  LLQASRSLDRLGVRHGLIASGFSWMPY--PTQVASVQTLVRRLDRLDWEPELIVVDEAHH 123
           + Q ++ +  L     + ++G +       T VAS+Q+  R L + +    L+++DE H 
Sbjct: 68  VAQNAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHR 127

Query: 124 VVPDNT--WGKVLSAY----PRSRVLGVTATPCRTDGRG---------------LGDVFD 162
           V  + T  + ++LS      P+ ++LG+TATP R  G G               LG +F+
Sbjct: 128 VSLEKTSQYQQLLSHLQQRNPQLKLLGLTATPYRL-GTGWIYKRHYHGKVGSPELG-IFE 185

Query: 163 DLIIGPTIAELTERGFL-CPTKIYAPPIQADLTGVRM-RAGDYAKDQLAQAMDKP----- 215
             I    I  L ++G+L  PT       Q D + ++  + G+Y + Q+   ++       
Sbjct: 186 QCIFELPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATT 245

Query: 216 VIVGDAID--HYRRLCPGVPAIGFCASVEIAQKVAVEFSSAGFK-AASLDGTLDSATRSH 272
            IV   I+  H+R+   G+  I F A+V  A+++  + +    +  A +        R  
Sbjct: 246 AIVKQLIELSHHRQ---GI--IIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDE 300

Query: 273 LIDDLGSGRIQVLTSCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHA 332
           LI+   +  ++ L +  +++ G D P V    +LRPT S+ L+ Q +GR LR   GK   
Sbjct: 301 LIERFKARELKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDC 360

Query: 333 LILDHVGNVMRHGLPEADREWTLEGEKRRSRKGESEEKPETVRQCPKCFCAHA------- 385
           L++D+  N      PE  +            K  S+  P  V  CP C  A+        
Sbjct: 361 LVIDYAANGYDLYFPEVGQ-----------AKPNSKSVPVQV-HCPVCQFANIFWGLTDD 408

Query: 386 -----------------------------PQPTCPNCGHRYVVEARRLEEVRGELIELDK 416
                                           +CP+CG    + AR  +  +  LI+ DK
Sbjct: 409 DGDIIEHFGRRCQGIVEHHGKKQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDK 468