Pairwise Alignments

Query, 469 a.a., DEAD/DEAH box helicase-like from Synechococcus elongatus PCC 7942

Subject, 982 a.a., helicase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (312), Expect = 1e-32
 Identities = 108/353 (30%), Positives = 169/353 (47%), Gaps = 30/353 (8%)

Query: 9   YQQQVVEELRHSYAT-GHRSPLVAMPTGAGKTAV--FSYISLQSAAKQKRTLILVHRKEL 65
           +Q++++E+L    +  G    L+   TG GKT +  F +        +   L + HR+E+
Sbjct: 250 HQREILEQLAVERSVHGRFKNLIVAATGTGKTIISAFDFARFYKQHPEANFLFVAHRQEI 309

Query: 66  LLQASRSLDRLGVRHGLIAS---GFSWMP------YPTQVASVQTLVRRLDRLDWEPEL- 115
           L QA      LG   G++ +   G  W+       Y    AS+Q+L  +LD L    +  
Sbjct: 310 LQQA------LGAYRGVLKNNQFGELWVAEHTPNSYKHLFASIQSLNLQLDNLPLAADFY 363

Query: 116 --IVVDEAHHVVPDNTWGKVLSAYPRSRVLGVTATPCRTDGRGLGDVFDDLIIGPT-IAE 172
             IV+DE HHV   +  G +L  +  + ++G+TATP R DG  +   F  +I     + E
Sbjct: 364 DYIVIDEVHHVAASSYRG-LLEHFEPTILVGLTATPERHDGVDILADFCGVIAAEIRLPE 422

Query: 173 LTERGFLCPTKIYAPPIQADLTGVRMRAGDYAKDQLAQAM---DKPV--IVGDAIDHYRR 227
              +  LCP + +A   + DL  +    G Y   +L+      D+ V  I+    +    
Sbjct: 423 AINQRHLCPFQYFAIDDETDLRNLNWSRGRYDVAELSNLYTHNDQRVTRIIRSLAETVTD 482

Query: 228 LCPGVPAIGFCASVEIAQKVAVEFSSAGFKAASLDGTLDSATRSHLIDDLGSGRIQVLTS 287
           +   + A+ FC S E A+ +A +F+ +G  A  L    +S  R      L SG++ +L  
Sbjct: 483 I-DSIKALAFCVSREHAEYMAKKFNLSGISADVLTSD-NSEERHEKRQSLVSGKLSILCV 540

Query: 288 CEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHALILDHVGN 340
            +I +EG DIP V   L LRPT+SL ++LQQ+GR LR    K    ILD VGN
Sbjct: 541 VDIFNEGVDIPEVDTLLFLRPTESLTIFLQQLGRGLRLTDDKQCCTILDFVGN 593