Pairwise Alignments

Query, 407 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Synechococcus elongatus PCC 7942

Subject, 371 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  231 bits (588), Expect = 3e-65
 Identities = 143/385 (37%), Positives = 229/385 (59%), Gaps = 36/385 (9%)

Query: 15  DTVIHRRPTRSVRVGDIWIGSRHPVVVQSMINEDTLDIDGSVAAIRRLHEIGCEIVRVTV 74
           ++ I RRP+  + VGD+ IG   P+ VQSM N  T D++ +VA IR L  +G +IVRV+V
Sbjct: 4   ESPIIRRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVEATVAQIRALENVGADIVRVSV 63

Query: 75  PSLGHAKAVGDIKKKLQDTYRDVPLVADVHHNGMKIALEVAKH-VDKVRINPGLYVFEKP 133
           P++  A+A   IK++ +     VPLVAD+H +  +IAL+VA++ VD +RINPG       
Sbjct: 64  PTMDAAEAFKVIKQQTK-----VPLVADIHFD-YRIALKVAEYGVDCLRINPG------- 110

Query: 134 DPNRQGYTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGSLAERMLFTYGD-TPE 192
                         IG + R  +  +V   R+++  +RIGVN GSL + ++  Y + TP+
Sbjct: 111 -------------NIGNEER--IRSVVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPQ 155

Query: 193 GMVESALEFLRLCEEMDFRNLVISMKASRAPVMMAAYRLMAKRMDDLGMDYPLHLGVTEA 252
            ++ESA+  + + + ++F    +S+KAS   + + +YRL+AK++       PLHLG+TEA
Sbjct: 156 ALLESAMRHVDILDRLNFDQFKVSVKASDVFLAVESYRLLAKQIKQ-----PLHLGITEA 210

Query: 253 GDGDYGRIKSTVGIGTLLAEGIGDTIRVSLTEAPENEIPVCYSILQALGLRKTMVEYVAC 312
           G    G +KS VG+G LLAEGIGDT+R+SL   P  EI V + IL++L +R   + ++AC
Sbjct: 211 GGARAGAVKSAVGLGMLLAEGIGDTLRISLAADPVEEIKVGFDILKSLRIRSRGINFIAC 270

Query: 313 PSCGRTLFNLEEVLHKV-RAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTIAL 371
           PSC R  F++   ++++ R   + +  +D++++GC+VNGPGE   +D G  G    +   
Sbjct: 271 PSCSRQEFDVIATVNELERRLEDVVTPMDVSIIGCVVNGPGEALVSDIGLTGGNRKSGYY 330

Query: 372 YRGRDEIKRVPEEQGVEELINLIKA 396
             G  + +R   E  V++L   I+A
Sbjct: 331 DDGVRQKERFDNEHIVDQLEAKIRA 355