Pairwise Alignments

Query, 599 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score = 79.7 bits (195), Expect = 3e-19
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 14/252 (5%)

Query: 335 LLIERSAKAWERSALLAVEGDRRRSELRVTTIVRASKGLATALVAFAV-LLAVLNTLGLP 393
           LLI  +AK   +     V        +R++ +++      +  V + + +L  L+ +GL 
Sbjct: 309 LLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLN 368

Query: 394 ASSVLAGSAILGLAISFGSQSLVKDLVNGCLILVEDQFAVGDVINVNGQGGLVETLNLRV 453
            + VL G  I G+ I F  Q  + +   G ++L+   F VGD ++  G  G V  ++L  
Sbjct: 369 LAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVN 428

Query: 454 TQIRDAEGGLITIPNSTI--SQVRNLS-RTWSRVDFNLEVGWENDVDQVLACLTHVVENL 510
           T IR  +  +I +PNS I    ++N++     RVD    +G+ +D+ +  A LT +V++ 
Sbjct: 429 TTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKS- 487

Query: 511 YADPEWQALICEPPEVLGVDAIAHQGV--LIKIWIKTQPLMQWKVGRELRRRVHHALQAE 568
                  A++  P   + V  +    +  +++ W+KT     W V  ++ + V      E
Sbjct: 488 -----HPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDD--YWDVYWDVTKEVKLRFDRE 540

Query: 569 GISIGRPQQLVY 580
           GISI  PQQ V+
Sbjct: 541 GISIPFPQQDVH 552