Pairwise Alignments

Query, 377 a.a., putative ABC transport system substrate-binding protein from Synechococcus elongatus PCC 7942

Subject, 869 a.a., PqiB family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 33  SLGQDRYDVIVEFNDTAGLTVGTPVIYRGVQVGQV--IDITAQSNSVLVRIQIQP 85
           ++ +D     +E ++   + VGTP+ +RG++VGQ+    +++Q NSVL++  I+P
Sbjct: 735 NVAEDALKFTLEDSNLGSMKVGTPIFFRGLKVGQIDGYSLSSQGNSVLMQAHIEP 789



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 17/146 (11%)

Query: 47  DTAGLTVGTPVIYRGVQVGQV--IDITAQSNSVLVRIQIQPASLAIPRDSVISAQISSLL 104
           +  GLT G  V Y+ + +GQV  + +T   ++V  ++++QP   ++ R        S+L 
Sbjct: 387 ENMGLTAGAEVRYKQLPIGQVLAVKLTKDLSAVEYQLELQPEFASLVRSDSYFIPESAL- 445

Query: 105 GSPNLTIEPKRNIPAEVLAKTQPRSPNCDRAVILCNGS----VVEGAQSASFASILTSIA 160
            S + +IE        V  KT+  +     AV L  GS    V   A+ + F+S+    A
Sbjct: 446 -SVDASIE-------GVSVKTRDLATLTKGAVSLIPGSNNTPVAANARLSLFSSV--EEA 495

Query: 161 TLVSEIEQAKLVNTLSQTSRDASEAA 186
               E +Q       SQ   D S+ +
Sbjct: 496 KQFFERQQRLYFTLTSQDGADVSQGS 521



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 40  DVIVEFNDTAGLTVGTPVIYRGVQVGQVIDITAQSNSVLVRIQIQP 85
           +V +  ND  G+  GT ++YRG+ VG +      +  V    + +P
Sbjct: 267 EVSLTMNDGNGIDKGTRIVYRGISVGSIQSKNLTTTGVTAIAKFEP 312



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 36  QDRYDVIVEFNDTAGLTVGTPVIYRGVQVGQVIDITAQSNSVLVRIQI 83
           Q R    +   D A ++ G+P+ Y+ +Q+G+V  +  QS +    I+I
Sbjct: 502 QQRLYFTLTSQDGADVSQGSPIYYKKMQIGRVESVNWQSKTEDFAIKI 549



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 32  VSLGQDRYDVIVEFNDTAGLTVGTPVIYRGVQVGQVIDITAQSNSVLV 79
           + +G +   + +  +    L VG+PV +R + VG V+      N+ ++
Sbjct: 140 MQIGSEGVMIELTADKLGSLDVGSPVFFRQIPVGSVVSYRLDGNARVI 187