Pairwise Alignments

Query, 302 a.a., ABC transporter for D-Cellobiose and D-Salicin, permease component 2 (from data) from Sinorhizobium meliloti 1021

Subject, 292 a.a., permease protein of sugar ABC transporter from Synechococcus elongatus PCC 7942

 Score =  134 bits (336), Expect = 3e-36
 Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 19/296 (6%)

Query: 11  PNQWLRNLNAKIASIPMILTAMVIFVGG---TAWTVVYSFT-NSKLLPRLAFVGFDQYER 66
           P +WL        +IP +LT   +F       AW  + +   N++L P   F+G   Y+R
Sbjct: 4   PPRWL--------TIPALLTITGVFAYPLLRAAWLSLQALNLNTQLQP--VFIGLANYQR 53

Query: 67  LWAAPRWLVSIQNLAVFGCLSLVFSLVIGFVLAALMDQKIRFENTFRTIMLYPFALSFIV 126
           LW   R+   + N  VF   S+   LV+G  +A L+ Q  R+    RTI L P+ L   V
Sbjct: 54  LWGDSRFWGDLFNTTVFTVTSVSLELVLGLAIALLLHQPSRWRGPLRTIALLPWVLPTAV 113

Query: 127 TGLVWQWLLNPQYGI-QSIVRSLGWTSFSFDPLYNSNIVIYGILIAALWQGTGLVMCLML 185
             L W W+ N  YG+    ++ LGW +   + L N       ++ A +W+ T  V  L+L
Sbjct: 114 MALGWAWIFNDPYGVWNDWLQQLGWIAAPINWLGNPRWAWLTLVAADVWKTTPFVAILLL 173

Query: 186 AGLRGIDEDIWKAARVDGIPMWKTYVLIIIPMMRGVFITTLVIIASGIVKVYDLVVAQTS 245
           AG + I ED+++A  ++G   W+++  I +P++R      L+  ++    ++DLV   T 
Sbjct: 174 AGRQAIPEDLYEAHCLEGATAWQSFWQITLPLLRPQLAIALLFRSAQAFGLFDLVKVMTG 233

Query: 246 GGPGIASEVPAKYVYDYMFQAQNLGQGFAASTMMLVTVAIIIVPWAYLEFGGGRKR 301
           GGP  ++E  A Y Y    +  + G G   +T+ +VT AI+      L +G GR R
Sbjct: 234 GGPANSTETLALYAYTTALRYLDFGYG---ATLAIVTAAILAAGLG-LIWGLGRSR 285