Pairwise Alignments

Query, 178 a.a., RNA polymerase sigma-E factor (sigma-24) protein from Sinorhizobium meliloti 1021

Subject, 244 a.a., RNA polymerase sigma factor from Burkholderia phytofirmans PsJN

 Score = 73.6 bits (179), Expect = 3e-18
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 13/178 (7%)

Query: 8   RVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPETEPAFRAWLFAILR 67
           R ++   PH    +  A  L  +   A D+ QE   RA         + A R WL AI+R
Sbjct: 22  RFQQLALPHLDAAYNLARWLCGNASDADDVVQEAFMRAFRFFDTFRGDSA-RPWLLAIVR 80

Query: 68  NIWIDQSRLRRRRSDLEQEFVTDLVPAP--------VAPETVLV---DAFSVRQAFTRLS 116
             W  + R RR  S    EF   +  A           P+ +L+   D   V +A  +L 
Sbjct: 81  RTWYTEWR-RRSSSHETVEFDDTMDDASFDGWSVGGADPQALLIRDEDTKRVHEALAQLP 139

Query: 117 TEHREILALVDISGFSYEEVAMMIAVPKGTVMSRVSRARRALASYLGDANVVELARHR 174
            E+RE+L L ++    Y+E+A +  VP GTVMSR++R RR LA+ L +      A HR
Sbjct: 140 VEYREVLMLRELEEMGYKEIAAVADVPIGTVMSRLARGRRKLAALLAEKQGGATASHR 197