Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 338 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Rahnella sp. WP5

 Score = 70.1 bits (170), Expect = 8e-17
 Identities = 71/253 (28%), Positives = 116/253 (45%), Gaps = 32/253 (12%)

Query: 7   LTAALSVACLAAGLTAPQANAADREFALVFKVLNNAFSPPIQQGCEAAAKKLGDVTCTYL 66
           + +A+S+ACL+A        AA+R  A + K++   +      G  AA K LG    TY 
Sbjct: 11  IASAVSLACLSA-------QAAER-IAFIPKLVGVGYFTSGGNGAMAAGKALG-ADVTYD 61

Query: 67  GPTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDVLPED 126
           GPTE   + QVQ+  + V +G   + V+A +P  +   +K A  +G+ V+T+D+D  PE 
Sbjct: 62  GPTEPSVSGQVQMINNFVNQGYNAIVVAAVSPDGLCPALKRAMQRGVKVLTWDSDTKPE- 120

Query: 127 AGLRSTYI--GTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIRDTLAG 184
              RS YI  GT      + +     + KK+   V     +P    +  + Q +++  A 
Sbjct: 121 --CRSIYINQGTPQQLGSMLVEMTSSQVKKEKAKVAFFYSSP---TVTDQNQWVKEAKAK 175

Query: 185 VTKD-KGAEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGGWAQY 243
           + K+  G E +T Q G+           +D T + Q    ++ +  +L A +A       
Sbjct: 176 IAKEHPGWEIVTTQYGY-----------NDATKSLQTAEGILKSYGDLDAIIAPDA---N 221

Query: 244 APQAYKQAMEPLK 256
           A  A  QA E LK
Sbjct: 222 ALPAAAQAAENLK 234