Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Rahnella sp. WP5

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 35/311 (11%)

Query: 11  LSVACLAAGLTAP-QANAADRE-FALVFKVLNNAFSPPIQQGCEAAAKKLGDVTCTYLGP 68
           L+V   AA +TA   AN   ++  ALV   LNN F   ++ G +  A KLG         
Sbjct: 6   LAVWVSAAAITASFSANVLAKDTIALVVSTLNNPFFVSMKDGAQKEADKLGYNLVVL--D 63

Query: 69  TEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMARIMKMAQDKGIPVVTFDTDVLPEDAG 128
           ++ + AK++   QD+  RG   + ++  +  A+   + MA    IPV+T D        G
Sbjct: 64  SQNNPAKELANVQDLTVRGTKLMLINPTDSDAVGNAVAMANQAKIPVITLDRQATK---G 120

Query: 129 LRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKA-RVQGIRDTLAGVTK 187
           + ++++ +DN  FG  +A   +  K               EN K   ++GI  T     +
Sbjct: 121 VVASHVASDN-AFGGKMAGDYIAKK-------------LGENAKVIELEGIAGTSVARER 166

Query: 188 DKGAEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNPELSAFVAVGGWAQYAPQA 247
            KG  +   ++ +   A  P   + D T     +++++T + ++ A  A         Q 
Sbjct: 167 GKGFAQAAEKHHFQILASQPA--DFDRTKGLNVMQNLLTAHQDVQAVFA---------QN 215

Query: 248 YKQAMEPLKA--RLDSKDLVVVFGDNFGPQLPLLAEGLSHYNIGQRPYDMGYETIMALDK 305
            + A+  L+A       D++VV  D     +  +  G     + QRP  +G   +   DK
Sbjct: 216 DEMALGALRALQTAGKTDVLVVGFDGTDDGIKAVNSGKMGATVAQRPEQIGVIGVQTADK 275

Query: 306 LTKGEKVEPFI 316
           + KGEKV   I
Sbjct: 276 VLKGEKVPAVI 286