Pairwise Alignments

Query, 337 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

Subject, 368 a.a., sugar-binding protein, putative (RefSeq) from Shewanella loihica PV-4

 Score =  219 bits (558), Expect = 8e-62
 Identities = 127/340 (37%), Positives = 194/340 (57%), Gaps = 10/340 (2%)

Query: 5   RTLTAALSVACLAAGLTAPQANAADREFALVFKVLNNAFSPPIQQGCEAAAKKLGDVTCT 64
           R L   +S+  LA    +   +A    FA+V K    AF    + GCEAAA++L DV C 
Sbjct: 31  RLLITLISLTLLATTTLSADVSAKTLRFAVVPKFYG-AFFDQSKLGCEAAARQLKDVECI 89

Query: 65  YLGPTEYDEAKQVQLAQDMVTRGVAGLGVSAGNPKAMAR-IMKMAQDKGIPVVTFDTD-- 121
           YLGP       Q ++ + ++ +G+ G+ V+    K +A   +  A+  GIPV+T+D+D  
Sbjct: 90  YLGPEISSVRLQDKVIEQLIDQGIDGIAVAITQSKFLAENSLTKAKAAGIPVITYDSDFD 149

Query: 122 --VLPEDAGLRSTYIGTDNYEFGIALAQKVLESKKDGGTVCIQSGAPASENLKARVQGIR 179
              L E   LR  YIGTDN+ FG+AL +++ + + +GGT+ IQ+G P S NL  R+ GIR
Sbjct: 150 APTLAEHQDLRRAYIGTDNFAFGLALGEQLKKLRPNGGTLIIQTGRPDSPNLNLRIMGIR 209

Query: 180 DTLAGVTKDKG-AEKLTGQNGWTEPAGCPVYNNDDITLAAQQVRDVMTNNP-ELSAFVAV 237
             L+G T +    ++L   NGWTE    P  N D ++ A +Q+  VM   P +  +F+AV
Sbjct: 210 SALSGKTYESPPGKRLQNDNGWTEIRE-PFSNFDQLSQAVKQMESVMKGKPIKADSFIAV 268

Query: 238 GGWAQYAPQAYKQAMEPLKARLDSKDLVVVFGDNFGPQLPLLAEGLSHYNIGQRPYDMGY 297
           GGW Q     Y++ + P K +L++K++VV+  D   PQL +L + L+H NIGQ PY+MG 
Sbjct: 269 GGWPQNDEALYRKMIAPYKIKLNNKEIVVIISDAAPPQLAMLQDHLAHTNIGQSPYEMGR 328

Query: 298 ETIMALDKLTKGEKVEPFIKTGTEVCTPEDALTTCGKTAN 337
           + I  L K+   +  E  + T  ++CTPE+A  TC K+ +
Sbjct: 329 QAIFTLHKIVSDQAFEQIVFTPIKLCTPENA-ETCTKSVS 367